Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01589 ATGTCGTGTGATGATTTCTCTTCTTTGGAATCTATTCAACACTTTCTTCTTGCCCATGAACATGATGATTCCAACCCTCTCGAGAATGTTTCCAACAACGAAATGTGTTACTCTCAACCCTACAATTCATCCCCAAGCCCTACCTTAAAGGAAGACTCTAGGGCAGCGCGTGAAGTTCACGCGCCACCGGTTTGGAAGCGCTACCGGGGTGTGAGGCGTAGGCCTTGGGGAAAGTTCGCCGCAGAGATAAGAGATCCAAAGAAGAACGGTGCTAGGGTTTGGCTTGGGACTTATGAGACTGAAGAAGAAGCAGGTTTAGCTTATGATATAGCTGCTTTTAAGATGCGTGGTAGCAAAGCAAAGTTGAATTTTCCTCATCTTATTGACTCTCATATGTCTCTGAAGCCAGTGAAAAAAATAAAGACTTCAAAAAAAAATGTATCGGAGTCTTTTTCGTTATTTTCACCGACTTCAGAGACTCGAGAGTCAAAGAAGAAGAAGAACTTGGCTGATTTGTTGAACAAGTTGGCCAAAAATAGGAGCCAAGTGCAGGTGTTTGAAATGGGTTTTCATGCAAATGATGCTCCTGTTGAACAATGGTGGAGTGAGTTGAATGGTTGTGTAATGGTGTAA 633 0.4297 MSCDDFSSLESIQHFLLAHEHDDSNPLENVSNNEMCYSQPYNSSPSPTLKEDSRAAREVHAPPVWKRYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETEEEAGLAYDIAAFKMRGSKAKLNFPHLIDSHMSLKPVKKIKTSKKNVSESFSLFSPTSETRESKKKKNLADLLNKLAKNRSQVQVFEMGFHANDAPVEQWWSELNGCVMV 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01589 210 ProSiteProfiles AP2/ERF domain profile. 67 125 IPR001471 GO:0003700|GO:0006355
Cca01g01589 210 MobiDBLite consensus disorder prediction 27 56 - -
Cca01g01589 210 Pfam AP2 domain 67 117 IPR001471 GO:0003700|GO:0006355
Cca01g01589 210 MobiDBLite consensus disorder prediction 28 50 - -
Cca01g01589 210 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 4 182 - -
Cca01g01589 210 SMART rav1_2 67 131 IPR001471 GO:0003700|GO:0006355
Cca01g01589 210 PRINTS Ethylene responsive element binding protein signature 68 79 IPR001471 GO:0003700|GO:0006355
Cca01g01589 210 PRINTS Ethylene responsive element binding protein signature 107 127 IPR001471 GO:0003700|GO:0006355
Cca01g01589 210 PANTHER DNA-BINDING DOMAIN 4 182 IPR044808 GO:0003700|GO:0009873
Cca01g01589 210 Gene3D AP2/ERF domain 66 126 IPR036955 GO:0003700|GO:0006355
Cca01g01589 210 SUPERFAMILY DNA-binding domain 67 126 IPR016177 GO:0003677
Cca01g01589 210 CDD AP2 66 127 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01589 Cca-Chr1 35779836 35780754 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01589 25 163 AP2-EREBP Transcription Factor Family AT2G44840 52.857 1.16e-36 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca01g01589 AP2 1.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01589 K09286 - gmx:100527194 263.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01589 01 35779836 35780754 Cca01g01589 01 35779836 35780754 ECH
Cca01g01589 01 35779836 35780754 Cca07g02092 07 48706245 48707267 PCT