Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01588 ATGGATGATACACTATATTGCGATCTTCCTTCACTAGAATCTGTTCAAAACTATATGCTTGACCTAGAAAACGATTCCAACAATCTCTCCATTGTTTCCAACAACGAAATCTACCACTCTCCAACGTATGATCCATTCCTAAGCCCCACATTAGGTATGGAAGGTGTCCACGACGTTCACGCATGTGAACGACCTGTGGACACACTTGAAGTTCACACGCCACCGGTGTGTAAGCATTACCGGGGCGTGAGGCAGAGGCCATGGGGAACATTCGCAGCAGAGATATGGGACTCAAAGAAAACTGGTGGAAGAGTTTGGCTTGGGACTTATAAAATTGAAGAAGAAGCAGCTTTAGCATATGATAAAGCTGCTTTTAAGATGCATGGTAGGAAAGCCAAGTTAAATTTTCCTCATCTTATTGATACTCACACATCTTTGGAGCCGGTGAGAATTAGAAAGGCTTCGAAGCCAGACTCCTCAAAGCCTTGTTCCTCATTTTCATCGGCTCCAAAGAGGCAAGGGTCAAAGAAGAGGAAGAACACGGCTGATTTGTTGAACAGGTTGGCTACCAGCAGAAGCCAAGTGCAAGTGTTTGAAATGGGTTCACATGCAAATGATGCTGACGTCAATGGAGGAATCAATTGA 645 0.4434 MDDTLYCDLPSLESVQNYMLDLENDSNNLSIVSNNEIYHSPTYDPFLSPTLGMEGVHDVHACERPVDTLEVHTPPVCKHYRGVRQRPWGTFAAEIWDSKKTGGRVWLGTYKIEEEAALAYDKAAFKMHGRKAKLNFPHLIDTHTSLEPVRIRKASKPDSSKPCSSFSSAPKRQGSKKRKNTADLLNRLATSRSQVQVFEMGSHANDADVNGGIN 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01588 214 Gene3D AP2/ERF domain 78 138 IPR036955 GO:0003700|GO:0006355
Cca01g01588 214 PANTHER DNA-BINDING DOMAIN 6 194 IPR044808 GO:0003700|GO:0009873
Cca01g01588 214 MobiDBLite consensus disorder prediction 152 183 - -
Cca01g01588 214 SUPERFAMILY DNA-binding domain 79 138 IPR016177 GO:0003677
Cca01g01588 214 SMART rav1_2 79 143 IPR001471 GO:0003700|GO:0006355
Cca01g01588 214 Pfam AP2 domain 79 129 IPR001471 GO:0003700|GO:0006355
Cca01g01588 214 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 6 194 - -
Cca01g01588 214 ProSiteProfiles AP2/ERF domain profile. 79 137 IPR001471 GO:0003700|GO:0006355
Cca01g01588 214 PRINTS Ethylene responsive element binding protein signature 80 91 IPR001471 GO:0003700|GO:0006355
Cca01g01588 214 PRINTS Ethylene responsive element binding protein signature 119 139 IPR001471 GO:0003700|GO:0006355
Cca01g01588 214 CDD AP2 78 139 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01588 Cca-Chr1 35730375 35731098 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01588 79 173 AP2-EREBP Transcription Factor Family AT2G44840 56.842 5.39e-31 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Cca01g01588 AP2 2.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01588 K09286 - gmx:100793895 245.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01588 01 35730375 35731098 Cca07g02091 07 48696711 48697630 PCT