Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01586 ATGCATTATTATTCTTCAAGCACACAGACTCCGTTGCTTCCGAAAACCGCGATTCTCGAACCTATCTATCTCCTAAGAAACATGGCTAGTGATTTTCCTTCACGTGTTCAATCATCCCAACTTGAACACGAACATGAACATGCTAGTTCCCACATTCTGGCGAATGTTTCCGACCACGAAACCTTTCACGCATCCTCGTACAATCCGTTTCCGAGCCCCACGTGCATCCATGACGCGATGCAATCATGGGCATGCAAAACCGAAGCGCCCGCGGAAGCGCGTGAGGTGCACGCGCCTCCGATGTGGAAGCGCTTCCGGGGCGTGAGGCGGAGGCCGTGGGGGAAGTTCGCGGCGGAGATATGGGATTCGAGGACGAAGAGTGGAAGGGTTTGGCTGGGGACATATGAGACTGAGGAAGAAGCTGGTTTGGCTTATGATAGAGCTGCTTTTAAGATGCGTGGTAGCAAAGCAAAGTTGAATTTTCCGCACTTGATTGGCTCCCACGCGCCACCGGAGAGAGTGGGAGTGGCGGCGGGCTCGAAGCGGCGGTCGCCGGAGCCTTGTTTGGCTGCCATGGAGCATGGATCACGGCCACAAGGGTCGAAGAGGAGGAGTAACCTAGCTGAGTTGCTTAATAGATTGGCCAAGAACAGAAGCCTAGTGTGTGTTCCAAACGAGGCACGTTAA 687 0.5371 MHYYSSSTQTPLLPKTAILEPIYLLRNMASDFPSRVQSSQLEHEHEHASSHILANVSDHETFHASSYNPFPSPTCIHDAMQSWACKTEAPAEAREVHAPPMWKRFRGVRRRPWGKFAAEIWDSRTKSGRVWLGTYETEEEAGLAYDRAAFKMRGSKAKLNFPHLIGSHAPPERVGVAAGSKRRSPEPCLAAMEHGSRPQGSKRRSNLAELLNRLAKNRSLVCVPNEAR 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01586 228 SUPERFAMILY DNA-binding domain 104 163 IPR016177 GO:0003677
Cca01g01586 228 Pfam AP2 domain 104 154 IPR001471 GO:0003700|GO:0006355
Cca01g01586 228 PANTHER DNA-BINDING DOMAIN 85 220 IPR044808 GO:0003700|GO:0009873
Cca01g01586 228 MobiDBLite consensus disorder prediction 172 204 - -
Cca01g01586 228 CDD AP2 103 164 IPR001471 GO:0003700|GO:0006355
Cca01g01586 228 ProSiteProfiles AP2/ERF domain profile. 104 162 IPR001471 GO:0003700|GO:0006355
Cca01g01586 228 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 85 220 - -
Cca01g01586 228 SMART rav1_2 104 168 IPR001471 GO:0003700|GO:0006355
Cca01g01586 228 Gene3D AP2/ERF domain 103 163 IPR036955 GO:0003700|GO:0006355
Cca01g01586 228 PRINTS Ethylene responsive element binding protein signature 144 164 IPR001471 GO:0003700|GO:0006355
Cca01g01586 228 PRINTS Ethylene responsive element binding protein signature 105 116 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01586 Cca-Chr1 35638143 35638829 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01586 104 190 AP2-EREBP Transcription Factor Family AT2G44840 64.773 2.11e-32 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca01g01586 AP2 5.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01586 K09286 - gmx:100792115 252.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01586 01 35638143 35638829 Cca01g01586 01 35638143 35638829 ECH