Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01585 ATGAGTCCTCATGCTTTGGACAATAACATGAATGCCCTTGATAGCTTTGTGCTCTCCGAAACACCGCCGCCGTTTCATGATGCTTTCACATCGATTTCTTCGGCGGCGGTGTTCGGCCAGAGCTCGAGCTTTCAAGACATTTTCTTGGCAGAGAACTGGGCGGAACTGCCGCTGAAGGAGGACGACACCGATGACATGGTCATCTACGGCGCATTGCGGGAGGCCGCCACCACCGGATGGTCTCCCACCAATGAGAATAGGGTGAGTAAAGTTGATGTAGCTGTGAAAATGGAAAATGGGAGTAAAAATAGTGACATTGCAACCGTGAGTGGCACTCACGCGCCTCCTAGAAGAGGGTGGAGCTACCGTGGCGTGCGGCGGAGGCCGTGGGGAAAGTTTGCGGCAGAGATAAGAGATGTTAAGAGGAATGGTGTAAGGATATGGCTTGGTACTTATGAAACTTCTGAGGATGCTGCTTTAGCTTATGATCGAGCCGCGTTTAAGATGCACGGCTCGAAAGTTAAGTTGAATTTTCCTCATTTAATCGGCTCAGATCATGCTGAGCCGGTTAAAGTTACAATGAAGAAACGTTCATTGGATATTTCTTCCTTGCGTCCATCCTCGTCTACGGTGGCCTCAAAGCGTAGTAAGGATGGCTCTTTGGTGGATTTGGAGCTAAATCACTCAAATGTGTGGCAGTTTTCCTTAGGCTCTATATGGCAATAA 726 0.489 MSPHALDNNMNALDSFVLSETPPPFHDAFTSISSAAVFGQSSSFQDIFLAENWAELPLKEDDTDDMVIYGALREAATTGWSPTNENRVSKVDVAVKMENGSKNSDIATVSGTHAPPRRGWSYRGVRRRPWGKFAAEIRDVKRNGVRIWLGTYETSEDAALAYDRAAFKMHGSKVKLNFPHLIGSDHAEPVKVTMKKRSLDISSLRPSSSTVASKRSKDGSLVDLELNHSNVWQFSLGSIWQ 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01585 241 SUPERFAMILY DNA-binding domain 122 180 IPR016177 GO:0003677
Cca01g01585 241 ProSiteProfiles AP2/ERF domain profile. 121 179 IPR001471 GO:0003700|GO:0006355
Cca01g01585 241 CDD AP2 122 181 IPR001471 GO:0003700|GO:0006355
Cca01g01585 241 Pfam AP2 domain 122 171 IPR001471 GO:0003700|GO:0006355
Cca01g01585 241 Gene3D AP2/ERF domain 121 180 IPR036955 GO:0003700|GO:0006355
Cca01g01585 241 PANTHER DNA-BINDING DOMAIN 32 210 IPR044808 GO:0003700|GO:0009873
Cca01g01585 241 SMART rav1_2 121 185 IPR001471 GO:0003700|GO:0006355
Cca01g01585 241 PANTHER BNAC04G53270D PROTEIN 32 210 - -
Cca01g01585 241 PRINTS Ethylene responsive element binding protein signature 122 133 IPR001471 GO:0003700|GO:0006355
Cca01g01585 241 PRINTS Ethylene responsive element binding protein signature 145 161 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01585 Cca-Chr1 35602229 35603220 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01585 27 223 AP2-EREBP Transcription Factor Family AT2G44840 48.485 5.40e-60 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca01g01585 AP2 5.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01585 K09286 - gmx:100804762 309.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01585 01 35602229 35603220 Cca01g01585 01 35602229 35603220 ECH