Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01566 ATGGCCGAGTCCGAAATCGAACACGATCTCGACCTCGAAGAGAAATCGTGGCACCTCCTCGCGCTCCTCCTCCGAATCGGCCACGCCGTTTACCCTCAGCGCCTCGCTGCGCAGTGTCGTTTATTCGCCGCCACGCCGGAATTCGTCTGCCACGTCACCACTCTCCGCGGTTCCCCTCTCTCCCTCACCGATAACGGACTCGTCACGCCTTCTGTTCGCGCCGTCTTCGCTCTCGGAAGCTTCTTCTCCCTCCGCTTCTCGCCGCAGTCGCAAACGCACAGTTTCAGAAAACGCAAACTGCTTTTCGATTCCGGCGAAGATAGAAGAGAATATAAGAGGTTAGCGATTCGTAATGGAGTTCGAGAATTTTCGTTCCAGAGTTTTGCTGATGCTGCAGAGGCTCTGATGAGAAGAAATATCTCTGTAATAAAATTTGAATCACAAAATATAGGTAGCGGGAATTTTGCATTCCCCTTGTGTATTGGTACAGATGGCGAGTGTTCAGGTTGTCCAGTGCCAAATTTTGAATATAGGGGAGCCAATAATGAAGCTAGCACAAGCATGTCTAATGGAGAGGCTTCTAAATCTATTATCAAAGCAAGCTACATAAACTGTCCGAAGCTAGCGGACATAAAGAGATTCATGGAATGTAATCACTTTGTTGACCGTGCTCTCCCGGATCCCTCTTTATGCAAAGCAGGTGTTGTTAGTAGTGTTGAATTTGGGAAGAAAACGGATCATTTTGACACATTTATGCTTGAATGTACCGAACAAAACAGTATTCATCATGTGGATGAGGATGGTATTTGTAAAAGTAACACCTGCAAAGATCAACCAAGGGAATCTAATGAATATGATGAGATGGAAAGTTGTTCAAAAAATGGGTTGATTGGTTCTGGCACAAATATAGACAAGGAAGATGTTGCTCAGATGGTCAATGCTGCTCTATATGGAGAAGAATTGACTAATGGTTTGGAACAAAAGAACCGTGTCCATTCAATAAATTTGGATAAAAAGGAGAGTGAGAGAAACACAGTGACCAAGTCTACTTATAAAATAGATAAGTTCTGTTCAAACCCAAAGCAGCTTTTGAAATCTTCTTGCATATTAAAGGGAGGACGGAAGACTGATCTACACCCTCAGTCCCAAATTCTCAAAGAGTCACTAGCCTGCAATAAATTTGGTAATGTTCCAAAACATGTTGATCAATGTAAAAATGATCAGAAACCAGCAGCAAGGAAGCAAAAAGAGAACATGGCAGAAACTATTGCCATGACTCCAAAGGTGGAGAGAAAAACATATCCATCATTTGAAGCTTTTACAGTAGAGGAAGAAGAAGGTTCAGGTGGTTATGGCACCGTTTACCGTGCTCAAAGAACTAATGATGGAAAAAGGGTTGCAATAAAATGTCCTCATAGTAATGCTCATAAAAGCCATGTAAATAATGAACGGAATATGCTCGAGCGTTTTGGTGGTAAAAACTTCATAATAAGGTATGAAGGTTCTTTAAAAGATGGCAGCAGCGACTGCTTTGTTTTAGAACATGTTGAGCATGACAGACCTGAGGTTTTGAAAAAAGAAATCGATATAGTTCAGCTTCAGTGGTACGGGTATTGCATGTTCAGGGCTCTTTATTGCTTGCACAAAGAGGGAGTTGTTCACAGAGACGTTAAACCTGGAAACTTTCTTTTCTCTCGAAAGCTAAACAAAGGATACCTTATCGATTTCAACCTTGCCATGGATTTAAAGCAGAAGTACAACAACGGAAGTAAATCAAAACCAAGCCTTGATGCGTCATCCAATAATGTTTCTCTCTCTTCCAGTTCTGCCTTTTTGGTCCAAAACAAAAACCTTGGAAGCAGCAAGTCTTTAACATCCAGCAAAAGGGCGTTGGCAGATTATAAGAATTATTCTGAACTTAATAAACATGTAAAGCAAAAGGCTTATGCTCTGAAAAATCGTCCTGACAAGGCTGGTGGGAGTTTACTTAGAGCACAAGGAACAGATGGCTCAGGTATAACCTCTACGAAAGATGCTAGCACTAGAACTGCTTCTGCGGAGAGGCTCAGGGAACCTTTACCTTCCAAAGGAAGAAAGGAGCTTATCAGCCTTGTGCAGGATTCTATGCAATGTGCAAACAACAGTTCAACTATAGGTCCTTCCTCTCAAAGGAAAAGGGTCACTGCCCCCAAAGGAGATGGAAAACAGAAAAAAGAAGGTTCATGCGTTGGAACCAAAGGATTCCGTGCCCCAGAGGTTCTGTTAAGGTCTCAGCATCAGGGACCTAAGGTTGATATTTGGTCAGCTGGAGTCACCCTACTCTACATGGTGATCGGGAAGACTCCTTTCACCGGCGACCCAGAACAGAATATAAAAGAAATTGTTAAATTCCGGGGCAGTGAAGAGTTTTGGGAAGTGGCCAAGCTACATGACCGTGAATTATCTTTTCCTGCGGAGTTACTTGATGAGCGTTACTTACAGTCATGGGACTTTGAAAGCTGGTGTAAGATTCACGCAAAGAGGCCAGAATTTCTTGAGCAAATCCCGAAATCGTTATTTGATTTAATAGACAAGTGTCTAAAAGTAAACCCAAGAAATAGAATTAGCGCAGAAGAAGTTCTAAGACATGAATTCTTTGATTCTTGTAATGAGTCCCTAAGGAAGCAAAGGATGATTAATCGAGCTCTAAGGTCGGAAGCTGCAGCTTCTAAAGCAATCTGA 2721 0.4248 MAESEIEHDLDLEEKSWHLLALLLRIGHAVYPQRLAAQCRLFAATPEFVCHVTTLRGSPLSLTDNGLVTPSVRAVFALGSFFSLRFSPQSQTHSFRKRKLLFDSGEDRREYKRLAIRNGVREFSFQSFADAAEALMRRNISVIKFESQNIGSGNFAFPLCIGTDGECSGCPVPNFEYRGANNEASTSMSNGEASKSIIKASYINCPKLADIKRFMECNHFVDRALPDPSLCKAGVVSSVEFGKKTDHFDTFMLECTEQNSIHHVDEDGICKSNTCKDQPRESNEYDEMESCSKNGLIGSGTNIDKEDVAQMVNAALYGEELTNGLEQKNRVHSINLDKKESERNTVTKSTYKIDKFCSNPKQLLKSSCILKGGRKTDLHPQSQILKESLACNKFGNVPKHVDQCKNDQKPAARKQKENMAETIAMTPKVERKTYPSFEAFTVEEEEGSGGYGTVYRAQRTNDGKRVAIKCPHSNAHKSHVNNERNMLERFGGKNFIIRYEGSLKDGSSDCFVLEHVEHDRPEVLKKEIDIVQLQWYGYCMFRALYCLHKEGVVHRDVKPGNFLFSRKLNKGYLIDFNLAMDLKQKYNNGSKSKPSLDASSNNVSLSSSSAFLVQNKNLGSSKSLTSSKRALADYKNYSELNKHVKQKAYALKNRPDKAGGSLLRAQGTDGSGITSTKDASTRTASAERLREPLPSKGRKELISLVQDSMQCANNSSTIGPSSQRKRVTAPKGDGKQKKEGSCVGTKGFRAPEVLLRSQHQGPKVDIWSAGVTLLYMVIGKTPFTGDPEQNIKEIVKFRGSEEFWEVAKLHDRELSFPAELLDERYLQSWDFESWCKIHAKRPEFLEQIPKSLFDLIDKCLKVNPRNRISAEEVLRHEFFDSCNESLRKQRMINRALRSEAAASKAI 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01566 906 SMART serkin_6 440 879 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g01566 906 Pfam Protein kinase domain 441 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g01566 906 Pfam Protein kinase domain 738 879 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g01566 906 MobiDBLite consensus disorder prediction 712 743 - -
Cca01g01566 906 Gene3D Transferase(Phosphotransferase) domain 1 715 905 - -
Cca01g01566 906 MobiDBLite consensus disorder prediction 667 682 - -
Cca01g01566 906 SUPERFAMILY Protein kinase-like (PK-like) 438 891 IPR011009 -
Cca01g01566 906 MobiDBLite consensus disorder prediction 728 742 - -
Cca01g01566 906 PANTHER CASEIN KINASE-RELATED 413 891 - -
Cca01g01566 906 Gene3D Transferase(Phosphotransferase) domain 1 412 596 - -
Cca01g01566 906 ProSitePatterns Serine/Threonine protein kinases active-site signature. 552 564 IPR008271 GO:0004672|GO:0006468
Cca01g01566 906 PANTHER CELL DIVISION CYCLE 7-RELATED PROTEIN KINASE 413 891 - -
Cca01g01566 906 MobiDBLite consensus disorder prediction 650 688 - -
Cca01g01566 906 ProSiteProfiles Protein kinase domain profile. 440 879 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01566 Cca-Chr1 34734482 34741821 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01566 743 885 Core Cell Cycle Gene Families AT2G38620 32.886 5.67e-12 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-2 Cca01g01566 Pkinase 5.9e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01566 K02214 - gmx:100795742 1412.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01566 01 34734482 34741821 Cca01g01566 01 34734482 34741821 ECH