Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01564 ATGAACAAGGTATTTGAATTTGGAGCATTATTAGCATCAGGAGGACAGGAATATGATATTGGAAATGATAATATAAAAAACCCAAAGGAGCGATTGGTTCGTCAGAAGCAAAATCTTCAACGTCGTTTAGGCTTGGATGTCTGTGAACAATTTATGGATATCAGTGATGTAATAAGAGATGAAGATCTTATGGCATCAAAATCAGACTCACATCTGAATGGAATAGATCGTAGAGTTTTTACATCTTGTTCTGTACATAACATCCAGAAAATGGTTGCAAACATGGTTCCTTGTGTCAAATCAAAGTGGCCAAGTGCAAGAGAACTGAATCTTTTAAAGCGAAAAGCAAAAATAAACTCTAAAGACCAAACAAAAACCTGGTGTGAAGATGGAAGTACAGAGGCATCAGGTGCTCAAAATTTGACTCCAAAAGGCACATCTCCTGATCCAGTAAATTTCAGTAAGGCATTCATGGATGTTAATCATGACGAAGATGGCTTTGAGCATGATGGGGATAGACAATGGCCTTTCCACGCTTTTGTTGAGCAACTTATTATTGATATGTTCGATCCTGTTTGGGAGATACGACATGGCAGCGTGATGGCATTGAGAGAGATATTAACTCATCAAGGTGCTTCTGCTGCAATAGACAATTTTGGTTTATTGGCTGCCCAATTGGTCTCTAAAATCACGCATGTCTCTCTTGATCTCGGCATGGAGTCGAAAAACCCTGGGAGGTTTACGTTGGGGAAGCAGTCGTCGCTGGCACCGAAATGCTGCAACGAGGAAGCGGGGCTTCAGAATGAGGGAGACGCCGTTGACCAGAGCGTGAGGTTGATGTATTCGGCGTTCGAGGGCGATGTGGATGGTATTCGCGAGGTGTTGGAGTCTGGGGTTAGTGTCAATTTCAAGGATATTGATTATCGCACTGCTTTTCATGTTGCCGTGTGTGAGGGATTCACTAAAGTCGTTGAGTTTTTGCTCCAGAAAGATGCTGAAGTTGACGCCAAGGATTGA 1017 0.4238 MNKVFEFGALLASGGQEYDIGNDNIKNPKERLVRQKQNLQRRLGLDVCEQFMDISDVIRDEDLMASKSDSHLNGIDRRVFTSCSVHNIQKMVANMVPCVKSKWPSARELNLLKRKAKINSKDQTKTWCEDGSTEASGAQNLTPKGTSPDPVNFSKAFMDVNHDEDGFEHDGDRQWPFHAFVEQLIIDMFDPVWEIRHGSVMALREILTHQGASAAIDNFGLLAAQLVSKITHVSLDLGMESKNPGRFTLGKQSSLAPKCCNEEAGLQNEGDAVDQSVRLMYSAFEGDVDGIREVLESGVSVNFKDIDYRTAFHVAVCEGFTKVVEFLLQKDAEVDAKD 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01564 338 MobiDBLite consensus disorder prediction 129 148 - -
Cca01g01564 338 Gene3D - 268 338 IPR036770 -
Cca01g01564 338 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 1 215 IPR044972 GO:0003677|GO:0016887|GO:0017025
Cca01g01564 338 MobiDBLite consensus disorder prediction 123 148 - -
Cca01g01564 338 ProSiteProfiles Ankyrin repeat profile. 307 338 IPR002110 GO:0005515
Cca01g01564 338 ProSiteProfiles Ankyrin repeat region circular profile. 307 338 - -
Cca01g01564 338 SUPERFAMILY Ankyrin repeat 115 338 IPR036770 -
Cca01g01564 338 SMART ANK_2a 274 303 IPR002110 GO:0005515
Cca01g01564 338 SMART ANK_2a 307 336 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01564 Cca-Chr1 34652350 34658438 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01564 237 338 MAP Kinase Kinase Kinase AT3G58760 44.643 1.32e-23 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01564 K15192 - ccaj:109793243 443.351