Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01551 ATGCGATGCCATTTATCTCGTCAGCATAAGTTTCCAATTCCGCTGCTTACATTGTGCCTTCATCTCGAGTATTTGGGTGAGATTGTAGTGTGGAAATGTCTCAACAGAACAGGACGTGTAGAGGTATTGGCCACAAAAACGGCATTGTTGAGAATTGTGAATCTTCAATATTTTCCAAGATTTCTACGCTTTATACCTTTAGCTTCAGAAGTTAAAAAGACAGCTGGTGTTTTCTCTGAAAACGCATTGCTCAGTGCCATGTACTATTTGATCTGGTATATGCTTGCTAGTCATATAACTGGCTCTGTCTGGTACTTACTAGCCATTGACCACAATGACACCTGCTGGAAGAATGCTTGTAAAGAAGTTGAAGGGTGCAATACACATTTCTTGTACTGTGGGAATTCGAACAAGCATATGTCAGGGTATGAAATGTGGAAAAATGTCAGCAAGACTATTCTGAAAACCAAATGCTTTGTTGAGGATGATTCCTCAGAATTTAACTATGGAATCTTCTCCCAAGCTATACAGTCTGATATTGTTGCTTCCATAGAACTTTCCAAAATTCTGTTACTGTTTATGGTGGAGCCTTCAAAACTTGAGGGGCTTCTAACCAGTACCTACCCTGGAGAGGTTATGTTTTCCATAGTAATAGCTATTATGGGGCTTATCCTTTTTGCTCTTCTGATTGGTAACATGCAGATACAAAAAGCTTTAACTACCTACCTTCAATCAATGTCAGTTCGTCTTGAGGAAATGAGGATCAAAAGATGTGACTCTGAGCAGTGGATGCATCATCGCTTGCTTCCTCAAGAGCTGAGGGAAAGAGTGAGACGCTATGACCAATACAAGTGGCTGAACACCCGTGGAGTAGATGAGGAGAGCTTAGTTCAGAGTCTTCCAAAAGATCTCAGGAGAGATATCAAACGCCATCTTTGTTTGAATTTAGTTAGAAGGCCTACTTTATATACAGAGGGCACTTACATCGTGAGGGAAGGGGACCCAGTGAATGGGATGCTCTTCATCATACGTGGGCGTCTAGAGAGTGTTACTACAGATGGTGGAAGGAGTGGATTTTTCAACAGAGGTCTTCTGAAGGAAGCTGACTTCTGTGGAGAAGAGCTACTAACATGGGCATTAGACCCCAAATCTGCTGCTAACTTGCCATCATCAACGAGGACAGTGAAGGCTATAAATGAGGTGGAGTCATTTGCTTTTGAAGCAGAGGAGTTTAAGTTTGTTGCTTCACAGTTTAGGCGCCATTGCATGAGAAAGATCGCAGAACAGCGCAGGAGGGAGGAAGAAGAATTGTATGATTCTGATAATGAAAACGGTGATGATTCAACCAGGGCCTTGATCAAGCATTCTAATTCTTCTTTTGCTGCTTCTAGCCTTGGACTTGGTACAACCGTCTACGCTTCTCGCTTTGCTGCTAATGCACTTCGTCATCATAGGCTCCGTGGTTCAGactcccacgccggccacgacacctccttccctgttagCAAAAGGAAAGAAACATGGCAAATGAAAATGAAATTTTGCATATTGTATGGGCTTGCTCTTGGACTTTGCAAATCGCTTTACTTTGCCATATGGGTAGTCCTTTGA 1611 0.4109 MRCHLSRQHKFPIPLLTLCLHLEYLGEIVVWKCLNRTGRVEVLATKTALLRIVNLQYFPRFLRFIPLASEVKKTAGVFSENALLSAMYYLIWYMLASHITGSVWYLLAIDHNDTCWKNACKEVEGCNTHFLYCGNSNKHMSGYEMWKNVSKTILKTKCFVEDDSSEFNYGIFSQAIQSDIVASIELSKILLLFMVEPSKLEGLLTSTYPGEVMFSIVIAIMGLILFALLIGNMQIQKALTTYLQSMSVRLEEMRIKRCDSEQWMHHRLLPQELRERVRRYDQYKWLNTRGVDEESLVQSLPKDLRRDIKRHLCLNLVRRPTLYTEGTYIVREGDPVNGMLFIIRGRLESVTTDGGRSGFFNRGLLKEADFCGEELLTWALDPKSAANLPSSTRTVKAINEVESFAFEAEEFKFVASQFRRHCMRKIAEQRRREEEELYDSDNENGDDSTRALIKHSNSSFAASSLGLGTTVYASRFAANALRHHRLRGSDSHAGHDTSFPVSKRKETWQMKMKFCILYGLALGLCKSLYFAIWVVL 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01551 536 Pfam Cyclic nucleotide-binding domain 323 414 IPR000595 -
Cca01g01551 536 SMART cnmp_10 300 433 IPR000595 -
Cca01g01551 536 SUPERFAMILY Voltage-gated potassium channels 57 285 - -
Cca01g01551 536 Pfam Ion transport protein 53 234 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cca01g01551 536 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 8-RELATED 419 492 - -
Cca01g01551 536 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 8-RELATED 24 421 - -
Cca01g01551 536 Gene3D Jelly Rolls 298 420 IPR014710 -
Cca01g01551 536 Coils Coil 424 444 - -
Cca01g01551 536 SUPERFAMILY cAMP-binding domain-like 252 420 IPR018490 -
Cca01g01551 536 CDD CAP_ED 298 424 IPR000595 -
Cca01g01551 536 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 24 421 - -
Cca01g01551 536 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 419 492 - -
Cca01g01551 536 ProSiteProfiles cAMP/cGMP binding motif profile. 296 385 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01551 Cca-Chr1 34258563 34270570 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01551 25 491 Ion Channels AT1G15990 57.278 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01551 K05391 - gmx:100810453 721.85