Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01546 ATGGAAGGAGAGAGAGGTGTCAATCCCAATTATGAGCTCCAAGTTTCATTCACGAACACCCCTCAAGCCATCCATGAAATGGGTTTTGTTCAATTCGAAGAAAACCAGGTTCTTAGCTTCTTGGCACCTTCTGCTCAATCCCAATCTTCTCAGCTCTCTCAATCTCTAAACCCTGGCAACGGCAACACAGGTGTTGCTGTTGCTACCACAACTGTCACTACTAGCACCGCCGTCACTTCTTCAACAACAATTGGTTTCAGCCATAATGACCTTGTATCAAGATCATCTTGGAATAATGAACAGGTGCGAACACTGGATCCCAAAGCTGTCAATGATGAAAATTGCACCGGAAATACTAGTGATGGCAACAACACATGGTGGAGAAGTGGAGGCTCAGAGAAGAACAAAGTGAAAGTGAGGAGGAAGCTGAGAGAGCCACGGTTTTGTTTCCAAACAAGAAGTGATGTCGATGTGCTTGATGATGGTTACAAATGGAGGAAGTACGGTCAGAAAGTTGTGAAGAATAGCCTTCACCCAAGAAGTTACTACCGCTGCACCCATAACAACTGTAGGGTGAAGAAAAGAGTTGAACGACTCTCAGAAGATTGTCGTATGGTGATAACTACCTATGAAGGCAGACACAATCACTCTCCTTGCGATGACTCGAATTCATCGGAACATGAATGTTTCACCTCGTTTTGA 702 0.4444 MEGERGVNPNYELQVSFTNTPQAIHEMGFVQFEENQVLSFLAPSAQSQSSQLSQSLNPGNGNTGVAVATTTVTTSTAVTSSTTIGFSHNDLVSRSSWNNEQVRTLDPKAVNDENCTGNTSDGNNTWWRSGGSEKNKVKVRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSSEHECFTSF 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01546 233 MobiDBLite consensus disorder prediction 109 134 - -
Cca01g01546 233 PANTHER WRKY TRANSCRIPTION FACTOR 12-RELATED 14 231 - -
Cca01g01546 233 MobiDBLite consensus disorder prediction 109 131 - -
Cca01g01546 233 SMART WRKY_cls 159 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca01g01546 233 Gene3D WRKY domain 145 219 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca01g01546 233 ProSiteProfiles WRKY domain profile. 154 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca01g01546 233 Pfam WRKY DNA -binding domain 160 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca01g01546 233 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 14 231 IPR044810 GO:0003700
Cca01g01546 233 SUPERFAMILY WRKY DNA-binding domain 151 217 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01546 Cca-Chr1 33903355 33911075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01546 3 233 WRKY Transcription Factor Family AT2G44745 54.812 7.50e-74 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca01g01546 WRKY 1.7e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01546 - - var:108347245 397.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01546 01 33903355 33911075 Cca01g01546 01 33903355 33911075 ECH