Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01544 ATGGTTGAGAGGGGTGCAAATGGTGGAAGAAGCATGTCCATGGATGAATTGGAGAAGCTTTCATGTTATGATTATGTTGCCAAAGGCAACATAAGCAGCCTTGTTGATTGCGCAATTTGCTTTGAGAGCCTCAACACAAGAGATAAGTGCATATTGTTACTTATGTGCAAGCATAGTTTTCTTGCTCAATGTGTTGACTCATGGCTTCTAATGCTTTGTTTGAGAGAGAGGGAGAAATCAAAGAGAATATGTGAGAAGTGA 261 0.4023 MVERGANGGRSMSMDELEKLSCYDYVAKGNISSLVDCAICFESLNTRDKCILLLMCKHSFLAQCVDSWLLMLCLREREKSKRICEK 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01544 86 ProSiteProfiles Zinc finger RING-type profile. 37 77 IPR001841 -
Cca01g01544 86 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 7 71 - -
Cca01g01544 86 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 7 71 - -
Cca01g01544 86 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 86 IPR013083 -
Cca01g01544 86 SUPERFAMILY RING/U-box 17 71 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01544 1 83 C3H Transcription Factor Family AT2G42360 32.955 1.51e-06 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01544 - K15692 gmx:102667575 113.62