Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01542 ATGAATGACATCCAAGGTATTATCACCTTGCGCATGTATACCCCAGACTCAGAAATCAAAAGAAAGTTTAGTTCTAGGTGGAACAAACTGAGCCAAGGAAAGGACTCTCATAAGGGTCCTTTTGCATTGAACACCTTTGGCCTTTACGCCTATGACACTGTTTGGGTGCTTGCTTCAGCACTCGATGCATTTTTTAGGAGTGGGGGAACTGTGTCATTTTCAAATGATTCAAGTCTAAACATGTTGAGAGGGGACACCCTTCACATGAATACTATGGGGGTGTTTGTTGGTGGTGAATCGTTGCGTCAAAAAATTTTAGAAGTGAATAGAAGTGGTTTAACAGGCCAAATGGAGTTTAGTGCAGATGGAAACTTGGTTAATCCATCATATGAAATAATTAATGTGATAGGCACTGGAATTAGGAGGATTGGTTATTGGTCTGAAGCCTCTGGTCTCCACACTGGTGAAGCTCCTAATCATTCCAATTCTAGTGAAGGACTATATGGTGTCATTTGGCCTGGTCAAACAACTCAAACCCCACGTGGTTGGGTTTTTGCAAGCAATGGAAGACACTTGAGAATAGGGGTGCCACTTAGAATTAGTAACCCTGAGATTCTGTCAAGAATTGAGGGAACAACTGAGATGTTTAGAGGTTATAGCATCGATGTGTTTACTGCTGCGTTGAACTTGTTGCCTTATCCTGTTCCCTACAAGTTTGTTCCATTTGGAGATGGTAAAACCAACCCACTAAATACAAAACTTCTCAACAAGATCACAATTGGAGAGTTCGATGCTGTTGTGGGGGACATTACCATTACCACAAACCGAACTAAGATAGTGGATTTTACACAGCCATATATTGAGTCTGGGCTAGTTGTTGTGGCACCAATTAGGAAAATGAAATCCAGTGCTTGGGCTTTTCTGAGACCATTCTCTCCAATGATGTGGTTTGTGACAGGAATGTTTTTCTTAGTTGTGGGAGCTGTTGTGTGGGTTTTAGAACGTCGCTTAAATGATGAATTTAGAGGCCCAGCAAGAAGGCAGTTTGTGACCATTATATGGTTTAGCTTTTCAACCCTGTTTTTTTCACATAGTAAGTGGTTGACCCAAGGCATCCATATCAACATTCCTATGCTTAAAACATCTCCATAA 1152 0.4123 MNDIQGIITLRMYTPDSEIKRKFSSRWNKLSQGKDSHKGPFALNTFGLYAYDTVWVLASALDAFFRSGGTVSFSNDSSLNMLRGDTLHMNTMGVFVGGESLRQKILEVNRSGLTGQMEFSADGNLVNPSYEIINVIGTGIRRIGYWSEASGLHTGEAPNHSNSSEGLYGVIWPGQTTQTPRGWVFASNGRHLRIGVPLRISNPEILSRIEGTTEMFRGYSIDVFTAALNLLPYPVPYKFVPFGDGKTNPLNTKLLNKITIGEFDAVVGDITITTNRTKIVDFTQPYIESGLVVVAPIRKMKSSAWAFLRPFSPMMWFVTGMFFLVVGAVVWVLERRLNDEFRGPARRQFVTIIWFSFSTLFFSHSKWLTQGIHINIPMLKTSP 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01542 383 SUPERFAMILY Periplasmic binding protein-like II 168 321 - -
Cca01g01542 383 SMART GluR_14 193 370 IPR001320 GO:0015276|GO:0016020
Cca01g01542 383 Gene3D - 190 303 - -
Cca01g01542 383 SUPERFAMILY Periplasmic binding protein-like I 4 183 IPR028082 -
Cca01g01542 383 Pfam Bacterial extracellular solute-binding proteins, family 3 216 297 IPR001638 -
Cca01g01542 383 Gene3D - 304 379 - -
Cca01g01542 383 Pfam Receptor family ligand binding region 4 137 IPR001828 -
Cca01g01542 383 PANTHER GLUTAMATE RECEPTOR 2 366 - -
Cca01g01542 383 Gene3D - 1 127 - -
Cca01g01542 383 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 2 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01542 Cca-Chr1 33846186 33847582 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01542 1 366 Ion Channels AT1G42540 57.333 1.10e-146 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01542 K05387 - ccaj:109800382 780.785