Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01536 ATGAGCAATTGTGTAAAGTGTCATCATGTGAAGTGTCGTGAAGTGGAgctctcaagtcctatagagattctgagtgtatgggttacCACGTATGGTTATGCTGCTCCAGAATTTGTGGCAACAGGGCACTTGTATGTGAAGAGTGATGTGTACGGATTTGGTGTAGTGCTACTAGAAATGCTGACAGGCATGCAGGCAATTGACACAGATCGGCCAGCAGGCCAGCACAACCTAGTTGAATGGGCAAAGCCTTTTCTTGTCTCCAAAAGAAAATTGAAAACCATCATGGATGCTAAGATAGAATATCAATATTCACCCAAGGCAGCATGGCAAGCAGCACAACTTACTCTAAAATGCCTAGAACCTCACCCTAACAAACGTCCTTCTATGAAAGATGTACTTGAGGAATTGGAAGTCATTGAAGCTATCCATGAAAAATTGAAGGTGTTTAGTTATGCGGAGCTGAAATCTGCAACAAAGAATTTTAGGCGTACAGTGGTTGGTGAGGGTGGTTTTGGCCTTGTTTACAAGGGATGGCTGGATGAGAAGACCCTAGCCCCTGTCAGGGCAGGTTTTGGAAAGGTCGTTGCCATAAAAGAGTTGAGACCGGGCAGCATGCAAGGGATTTTAGAGTGGCAGTCAGAAGTATACTTTTTAGGAATACTTTCTCACCCCAACCTGGTCAACCTCTTGGGTCGTTACAAAAAATGTCAAGTTAATTTTATGTTATAG 732 0.4112 MSNCVKCHHVKCREVELSSPIEILSVWVTTYGYAAPEFVATGHLYVKSDVYGFGVVLLEMLTGMQAIDTDRPAGQHNLVEWAKPFLVSKRKLKTIMDAKIEYQYSPKAAWQAAQLTLKCLEPHPNKRPSMKDVLEELEVIEAIHEKLKVFSYAELKSATKNFRRTVVGEGGFGLVYKGWLDEKTLAPVRAGFGKVVAIKELRPGSMQGILEWQSEVYFLGILSHPNLVNLLGRYKKCQVNFML 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01536 243 Gene3D Phosphorylase Kinase; domain 1 142 243 - -
Cca01g01536 243 ProSiteProfiles Protein kinase domain profile. 161 243 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g01536 243 ProSiteProfiles Protein kinase domain profile. 1 147 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g01536 243 PANTHER SERINE/THREONINE-KINASE CX32, RELATED PROTEIN 144 243 - -
Cca01g01536 243 PANTHER SERINE/THREONINE-KINASE CX32, RELATED PROTEIN 28 144 - -
Cca01g01536 243 SUPERFAMILY Protein kinase-like (PK-like) 145 235 IPR011009 -
Cca01g01536 243 Gene3D Transferase(Phosphotransferase) domain 1 9 141 - -
Cca01g01536 243 SUPERFAMILY Protein kinase-like (PK-like) 22 135 IPR011009 -
Cca01g01536 243 ProSitePatterns Protein kinases ATP-binding region signature. 167 199 IPR017441 GO:0005524
Cca01g01536 243 Pfam Protein tyrosine and serine/threonine kinase 166 236 IPR001245 GO:0004672|GO:0006468
Cca01g01536 243 PANTHER OS01G0588500 PROTEIN-RELATED 144 243 - -
Cca01g01536 243 PANTHER OS01G0588500 PROTEIN-RELATED 28 144 - -
Cca01g01536 243 Pfam Protein kinase domain 24 135 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01536 Cca-Chr1 33640822 33649741 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01536 148 236 Receptor kinase-like Gene Family AT4G02010 44.444 1.03e-13 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Cca01g01536 Pkinase 4.6e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01536 - - ccaj:109818824 449.514