Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01535 ATGGGGAATCACAGGTTTAAGTTATCAGATATGATTCCAAATGCTTGGTTTTACAAGCTGAAGGACATGGGGAAAGGAAGAAATTCAAGGAAACAAAACACCACGCCCTCTCGGAAAAAGAAGCAATCTTCTTCACCCCCCACAACCACACAAACACATTCATCAAAACCAAACCAACCCCACAACAACCAATACTACAACAAACCCAGAAAGTCCTACTACTTCACAAGAGACCTTACTCCATCCAACACCAAACTCCACCACACCTCACCCTCAAACACCCCAAAACTTTCCAAACAAACAACAACCTCAAAACTTGTCTCCTCAGGTTGTAGCTGCCGCACCACTCTAGAATCCATGTGGACCAAATCAGATTCCCCacatgaacatgaacatgaacatgaacatgaccatgaccatgaacaCTCCTCTTCATCCCCGTTTGACACCTCACCCGAGTCACAATCCCAAGAATTCAGAACAGACCGTGTTCTCCCGTGTTCCTCATCATTCGATGAAATGCTTTCCTTGTCCACCACCTCTTGCAGCTTCACCACAAACAAAAACAACCCCACCAACGACACCATCATCAACGTGGACAAAAACTCCATAGCAAGAAAAGACACCAACCTCGATGGCTACCACAATTGCAACAACCACTATGAAGACGATCACACTCACACCTTCTCAGAACTCGAGCTTCCCCCGATCATAACAAGGCCAAAGAAGAGTGAACTCAAACAAGGGTCGTTGAAAGTGAGAATTTTGAAGGAGGAGGACCCTGCAATGCTGAAGGAACAAAAGAAGAACCGTTCTGTGAGAAGGCAGAGGCTATCTGTGAGTTCTCCGGGGGTGAGGGCGAGTCCGGGCTGCCGGAGAAGCCTCTCCGGTAGCTTTGCGATAGTGAAGTCCTCGTTTGACCCACAGAAGGATTTCAGAGAATCCATGGTGGAGATGATTGTGGAGAACAACATAAGGGCATCCAAGGACTTGGAAGATCTACTTGCTTGCTACCTTTCCCTCAATTCAGATGAGTATCATGACCTCATCATCAAAGTGTTCAAGCAAATTTGGTTTGATTTCACTCAACCAAGCAAGATCAAAAACCTTGTTTCATACTTGGTCTCGCAATTGAGATTGTATGCAAATATGATTTCAATTTCAAACTAG 1170 0.4368 MGNHRFKLSDMIPNAWFYKLKDMGKGRNSRKQNTTPSRKKKQSSSPPTTTQTHSSKPNQPHNNQYYNKPRKSYYFTRDLTPSNTKLHHTSPSNTPKLSKQTTTSKLVSSGCSCRTTLESMWTKSDSPHEHEHEHEHDHDHEHSSSSPFDTSPESQSQEFRTDRVLPCSSSFDEMLSLSTTSCSFTTNKNNPTNDTIINVDKNSIARKDTNLDGYHNCNNHYEDDHTHTFSELELPPIITRPKKSELKQGSLKVRILKEEDPAMLKEQKKNRSVRRQRLSVSSPGVRASPGCRRSLSGSFAIVKSSFDPQKDFRESMVEMIVENNIRASKDLEDLLACYLSLNSDEYHDLIIKVFKQIWFDFTQPSKIKNLVSYLVSQLRLYANMISISN 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01535 389 Pfam Transcriptional repressor, ovate 305 360 IPR006458 -
Cca01g01535 389 MobiDBLite consensus disorder prediction 123 146 - -
Cca01g01535 389 PANTHER TRANSCRIPTION REPRESSOR OFP1-LIKE 3 363 - -
Cca01g01535 389 ProSiteProfiles OVATE domain profile. 301 360 IPR006458 -
Cca01g01535 389 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 3 363 IPR038933 GO:0045892
Cca01g01535 389 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 300 360 IPR006458 -
Cca01g01535 389 MobiDBLite consensus disorder prediction 122 162 - -
Cca01g01535 389 MobiDBLite consensus disorder prediction 266 291 - -
Cca01g01535 389 Pfam DNA-binding domain 1 45 IPR025830 GO:0003677
Cca01g01535 389 MobiDBLite consensus disorder prediction 38 67 - -
Cca01g01535 389 MobiDBLite consensus disorder prediction 81 109 - -
Cca01g01535 389 MobiDBLite consensus disorder prediction 147 162 - -
Cca01g01535 389 MobiDBLite consensus disorder prediction 23 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01535 Cca-Chr1 33601744 33603238 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Cca01g01535 Ovate 2.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01535 - - ccaj:109818825 677.552