Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01529 ATGCCTCCAAGAACGGCGAAGCGAGGGTCGGCGTCTTCCGCCTCGAGGAGGGGCGGCAGAGGAGGCAGGGGAGCCGCGAAGGGTGCGCAGAACCAGCATCATCACGAGCCGGAGGAGACGCTTAAGGTCGAAGAGAAAGAGCCCgttgttgttggtgttgttgctgAGGAGGAGGAGCACAAGATGGTGGTGGAAGAAGAGAGCCCTGCTGTTGAGGTGAAACAGCTTGTGGTTGAGGAGAAGGAGTCTGTCGTAGTGGTTGAGGATAAGTCTATTGATGTGAACCAAATGGCTCCTGAGGCTGTGGAGGAAGCGGCTAATGGGTTGCCTATGGCGAAAAACGATGAAGACGAGGTTAAGGAGTCCATAGATGAATATGAGAAAGATGAACGGTTGGATTTGGAGGATAATGATCCTGAGTATGAAGCTGAGGAGTATGGTGGAGTTGATTATGATGAGAAGGAAATTGAACAAGATGAGGGTCATGAGGTGGGAAATGAATTAGAGGAAGAAGAGGCTGAAGATAATGTAGGTGAAGAGGGTGATACAGGTGAGGAAGAAGTTGAAGATATTCATGATGAAATTGAGGCTGAAGAGGAGCATAAGCGTGCTGGTGAGGAGCATGAGCATCCAGACTTTGCTGATGTGGAGGAAGAGGAACACCGAGAAGTTGTGAAGGAGAGGCGAAAGAGGAAAGAATTTGAAGTTTTTGTAGGGGGCCTGGACAAGGATGCTAACGAGAGTGATCTGAGGAAGGTTTTTGGTGAAGTTGGGGTGGTTACAGAAGTTAGGTTGATGATGAATCCTCAGACTAAAAAGAACAAGGGATTTGCATTCTTGCGTTTTGAAACTGTGGAACAAGCAAAGCGAGCTGTGGCAGAGCTAAAAAATCCAGTGATCAATGGCAAACAATGTGGTGTTACTCCTAGTCAGGACAGTGATACCCTTTATTTGGGAAACATATGCAAGACATGGACAAAGGAAGCTTTAAAAGAGAAGTTGAAACATTATGGAGTTACAAATGTTGAGGATTTGACTTTGGTAGAAGATACTAATGATGAAGGAAAGAACCGTGGATTTGCATTTTTGGAATTTTCCTCTCGTTCAGATGCTATGGATGCATTTAAGCGACTGCAGAAGAGGGATGTTGTATTTGGAGTTGATAAGCCTGCAAAAATTTCTTTTGCAGATTCTTTTATTGACCCCGGTGATGAAATTATGTCCCAGGTTAAAACTGTGTTTATTGATGCATTGCCTCCTTCATGGGATGAAGATTATGTCCGGGATCTTCTCAAGAAATATGGAGAGATTGAAAAGGTTGAGCTTGCCAGGAACATGCCAGCTGCCCGTAGGAAGGACTATGGGTTTGTTACATTCGGCACCCATGATGCTGCTGTAAAATGTGCTGAATGCATTACAGGCACAGAGTTGGGTGAAGGTGACAAGAAGGCAAAAGTTAGAGCAAGGTTGTCAAGACCACTTCAGAGAGGCCGTGGAAAACACATTAGTCGTGGGGACTACCGTTCTGGTCGCGGTTCTGGAATGATGTCGAGGCCATCATGGAGTCGACCTCCACCTCGTAGTTTTCCTCCGCGTGGTGTAAGAGGAATTGGAAGTCGTGCTCCACCAGTCAGACCAGTTAGTGTGAGAGATAGACGCCCTATCATATCTGTATCAGCAAGAAGTAGGCCAGTGCCTCCTCCATCTAGATCTTATGATAGGAGACCAGTTGCATCTGCATATCCAAAAAGTAGCATGAAGAGAGATTATGGCCGGCGTGAGGATATACCACCTCCAAGAAGTAGAGTTGCTACAGATTATGGCTCAAGGGTGGCTTCTGAAAGACGACCGTCTTACAGGGATTATCCTGCCCGTGGTCCTGGCTATGCTGAGCTCCCAAGAAGTACATCTCGTGCTGCACCAAGGAGAGGCTATGTGGATGATGGATATAGCCAAAGATTTGAGAGGcctcctcctcctcctcctcctcctcATCTAAGTTACCGTGAAGGACGTCCCCGAGATTATGATGCTGTGTCTGGCTCAAAACGTTCTTATGCTGCTATTGATGATGTTCCTCCACGATATACGGATACCAATGCTCGCCAATCAAGAGCTCGATTAGACTATGAGTATAGTGGCGGTGCTTCACAGTATGGTGATGCTTATGGTGATAGACTTGGAAGATCTAGTCTGGGATATGGTGGGGGCAGTAGAAGTTCTATTTCTAGCCAAGATTCACATGGGATGTATAGTAGTCGACAAGGCCCAAGTTATGGAGGAGGTTCTTTTAGTGGCAGTGATGTTGGTGGCATGTACTCATCAAGTTATGGTGGTGATTACATTTCTCGTGGAAGTGATGTTGGTGGCAGCTCATATTCATCTGTGTATTCTGGTAGGGGTGTGGGTGGTGGTAGCAGTTATATGGGTGGTGGTGGATCAGGATCTTATTATTGA 2457 0.455 MPPRTAKRGSASSASRRGGRGGRGAAKGAQNQHHHEPEETLKVEEKEPVVVGVVAEEEEHKMVVEEESPAVEVKQLVVEEKESVVVVEDKSIDVNQMAPEAVEEAANGLPMAKNDEDEVKESIDEYEKDERLDLEDNDPEYEAEEYGGVDYDEKEIEQDEGHEVGNELEEEEAEDNVGEEGDTGEEEVEDIHDEIEAEEEHKRAGEEHEHPDFADVEEEEHREVVKERRKRKEFEVFVGGLDKDANESDLRKVFGEVGVVTEVRLMMNPQTKKNKGFAFLRFETVEQAKRAVAELKNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDLTLVEDTNDEGKNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDKPAKISFADSFIDPGDEIMSQVKTVFIDALPPSWDEDYVRDLLKKYGEIEKVELARNMPAARRKDYGFVTFGTHDAAVKCAECITGTELGEGDKKAKVRARLSRPLQRGRGKHISRGDYRSGRGSGMMSRPSWSRPPPRSFPPRGVRGIGSRAPPVRPVSVRDRRPIISVSARSRPVPPPSRSYDRRPVASAYPKSSMKRDYGRREDIPPPRSRVATDYGSRVASERRPSYRDYPARGPGYAELPRSTSRAAPRRGYVDDGYSQRFERPPPPPPPPHLSYREGRPRDYDAVSGSKRSYAAIDDVPPRYTDTNARQSRARLDYEYSGGASQYGDAYGDRLGRSSLGYGGGSRSSISSQDSHGMYSSRQGPSYGGGSFSGSDVGGMYSSSYGGDYISRGSDVGGSSYSSVYSGRGVGGGSSYMGGGGSGSYY 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01529 818 MobiDBLite consensus disorder prediction 110 127 - -
Cca01g01529 818 MobiDBLite consensus disorder prediction 1 47 - -
Cca01g01529 818 MobiDBLite consensus disorder prediction 480 704 - -
Cca01g01529 818 MobiDBLite consensus disorder prediction 105 225 - -
Cca01g01529 818 MobiDBLite consensus disorder prediction 29 47 - -
Cca01g01529 818 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 411 493 IPR000504 GO:0003723
Cca01g01529 818 PANTHER RNA RECOGNITION MOTIF 85 818 - -
Cca01g01529 818 Gene3D - 402 519 IPR012677 -
Cca01g01529 818 MobiDBLite consensus disorder prediction 734 763 - -
Cca01g01529 818 SUPERFAMILY RNA-binding domain, RBD 235 478 IPR035979 GO:0003676
Cca01g01529 818 MobiDBLite consensus disorder prediction 789 818 - -
Cca01g01529 818 MobiDBLite consensus disorder prediction 128 194 - -
Cca01g01529 818 CDD RRM_SF 316 383 - -
Cca01g01529 818 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 85 818 - -
Cca01g01529 818 MobiDBLite consensus disorder prediction 586 600 - -
Cca01g01529 818 SUPERFAMILY RNA-binding domain, RBD 311 399 IPR035979 GO:0003676
Cca01g01529 818 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 234 312 IPR000504 GO:0003723
Cca01g01529 818 Gene3D - 168 308 IPR012677 -
Cca01g01529 818 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 314 398 IPR000504 GO:0003723
Cca01g01529 818 SMART rrm1_1 315 394 IPR000504 GO:0003723
Cca01g01529 818 SMART rrm1_1 235 308 IPR000504 GO:0003723
Cca01g01529 818 SMART rrm1_1 412 487 IPR000504 GO:0003723
Cca01g01529 818 MobiDBLite consensus disorder prediction 195 225 - -
Cca01g01529 818 CDD RRM_SF 413 487 - -
Cca01g01529 818 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 236 304 IPR000504 GO:0003723
Cca01g01529 818 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 413 478 IPR000504 GO:0003723
Cca01g01529 818 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 316 382 IPR000504 GO:0003723
Cca01g01529 818 Coils Coil 109 129 - -
Cca01g01529 818 Gene3D - 314 397 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01529 Cca-Chr1 33454649 33461320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01529 229 492 Eukaryotic Initiation Factors Gene Family AT1G49760 24.080 1.14e-15 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01529 - - gmx:100779340 1101.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01529 01 33454649 33461320 Cca01g01529 01 33454649 33461320 ECH
Cca01g01529 01 33454649 33461320 Cca07g02052 07 48078283 48082681 PCT