Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01508 ATGGAGCCTGTGCTATCAATAGTGGAAAAAGTGCTTGGATATGTGGTTCGTCCGGTTTATAAGCAGGTGGCCTACATCTTCCAGTACAAGCAATATGTAGATGAACTAAATCATAGTGTTGCGAATCTTAGACGTGAAAAGGATGGGCTGGAACACAAAGTTGTTGATGCTGATAGTAATCTAAAAAAGATTGAAGCTAAGGTCACAGAATGGTTACTGGAAGTAGGTGAATTTGAGTCTAAATTTGAGAATTTTATGAAAGATGAAGGCCACACAAAGTCAAGGTATCCTCACTTATGGAATAGGCATAAACTAAGCAGACGATCAACAAAGATGTCAATGAAGGTTAAGAAGCAAAGAGATGAGGCCCCCGATGTTGATGAAGTTGCCTATACGGAGAACGTAACATCTAATGATGTCACTTACTCTAATGTTGGCTACATGGATTTTGGTTCTAGAAAATCCACAATGAATGACATATTGGCATTACTTCAAGATTCCACGGTCAGAATGATTGGGCTGCATGGGCCAGGTGGTGTGGGTAAGACCACTTTTGTCAAAGAAATTGCTACTATAGCTCGAAACAAGAAGATGTTTAATGAGGTGGTAATAGCAGAAATAACAGCCAATCCCAATTTGCAACAAATCCAGGAAGAAATTGCTTACGTGTTAGGATTGAGATTGGAAGGGGATGGTGAAAATGTGAGAGCTGATTGTATACGAAGGAGGTTAAAGAAAGAGAAAGAGAACACCCTTATAATATTGGATGACCTATGGGACAAATTAGATTTGAACAAGTTAGGGATTCCACTtgatgatgatgatgattatgatgatgatTTAAGCAAGATGAAAGAGATGAAAAGTGAAAATGAAATGAATCTTAGGAGCAAAGTGATGAAAAAAGAAAGACCTCTTGGTGATTATAACAGGTGCAAAATTTTGCTAACCTCAAGGAATGAAAAAGTATTGTTTGATGAAATGGATGTTAAGTCAACATTTTGCATTAAGGAATTAGATGACAAGGATGCTCTGATGTTGTTGCAGAAGGTGGCTGGAATACCTAATGAAATGTCCAAAGTTAAACAAGAGTTTCTTAAGTATTGTGCGGGGATACCCATGGCAATAATTACTGTTGGCAGGGCATTAAGAGACAAGAGTGACTCAGTGTGGGAAGCTGCACTAGAAAAACTTAAAAAGCAAGAATTGGTGGGAATGGAAAAGGCTATGGAAAATTCTTTAAAGATGAGTTATGACTATCTAGAAAGTGAGGAACTCAAGTCCATTTTCTTACTTTGTGCTCAAATGGGTCATCAACCACTAATTACGGACTTGGTGAAGTATTCCTTTGGTTTGGGTATACTTGAAGGGGTCTACTCGCTTATGGAAGCTCGTGACAGAATTCATACATCAATAAAAAAGCTAAAAGACTCAAGTTTGGTGTTGGGTGGAAGTTCTAGTAATCATTTCAATATACATAATATGGTTCGAGACGCTGCTTTGTCAATAGCACACAAGGAGAAAAATATATTTATTATGAGAAGTGGTAAACTTGATTGGCTTGAACTTGAGAAGTGCACTTCAATTTCTATATGCAACAGTGATATCCTTGATAAACTTCCTAATGTTATAAATTGTCCTCAACTTAATTTTTTTCAAATTAATAATGATGATTCATCTTTGAGAATACCTAACAGTATTTTTAAAAGAATGAAAAAACTCAAAGTGTTAATATTGAGTGGTTTTCATCTGTCAAACTTACAAGATTTAATTAAAGGTCTATCAAATCTCAGAATGCTTTGTTTGGAGCGATGCAATTTAGATGGCAATTTATCAATCATAGGAACGTTGAAAGAATTAAGAATTCTTAGTTTTTCTGGGTCTCAAATTGAAAATTTTTCAACTGAGTTGTGGTGCTTAGATAAGCTACAATCACTAGACACCAGAAATTGTTGCATACAAAGGATGTACCTACCTAATTCTATATCAAGGTTGACTTCTTTGGAAGAGTTGTATGTAAGAAAGTGTTTGATCTACTCTGTTGTGGGAAAAGAGACAAACAGTCCAATTTCATTGCTTTCTATACTAAAAAATTTGCATCAACTGAAAGTGGTGGACTTGAGCCTCCCATGTGCTACAGTTTTTCCCAAGGACTTGTTCTTTGAAAACTTATATGATTACAAGATTGTGATTGGAGACATCGAGGTGCTTTCAGGTGGAGATTTCAGGATGCCTAATAAGTACGAACCATTTAGATCTTTGGCATTGCAACTGAAGGACGATACTAACAATATTCACTCTCAAAATGGGATAAAATTGTTGTTTAAAACAGTTCAAAATTTGTTATTGGGAGAGATAAATGGTGTTAAAAATGTTATTTATGAGTTGAATTTGGATGGATTTCCAGATCTGAAACACTTATCTATCACAAATAATTTTAGCATCAAACATATCTTCGATCCAAAGGATTTGGCTCATCCTCCGGATGTTTTTCCCAATTTGGAATCTTTATGCCTTTACAAATTGTGGAACATAGAGATGATATGTTGCGGTCCAGTTACAGATGTCTCATTTACCAAATTGAAGACCATCAAGATCAATATGTGTGCCCATTTGAAGAATGTCATCTCAATTTACATGGTTAAACTTATTTCTTGTGTAGAAACAATTGATGTTTCTGATTGTGATTCTATAGAGGAGATTGTTGAAATACCGCAAATTCTGATAAGAGAAGAGCAAGACATGGTTCCTCCTCTCTTTGGTAAACTGGTTACAATTTCAAATTTACATAGCTTGAATTTATCCTCGATCAACATCCATAAGATATGGTGTGACCAGTCCCTGTCAAGCTTTTGCTTTCAAAACTTAATAAAACTAGTTGTGAAAGACTGTAATAAGTTGAGATATTTGTGTTCATTGTCTGTGGCTAGCGGTTTGAGCATGCTAAAAATCCTCTATGTAAGTGGGTGTCATGTGATGGAGAAGATTTTTTGCACCGAAGGAAATGGTCCACACAAGGTCTTTGTCTTTCCAAAGTTGGAGGAAATCCACCTCAGCAAAATGGAAATGGTAACAGACATATGGCAGACTGAAATGAGTGTTAATTCCTTTTGTAGTCTCATTTCTGTGCACATTGAAGAATGTGAAAAATTAGAAAAGATTTTTCCGAGTCACATTGAAGGATGGTATGCAAGTTTGAAAAAGTTGAAGGTTGTTAATTGTCAGTTAGTGAAAGTGATTTTTGAAATCAAAGATTCCCAACAAAGAGATGCATCTGGTGGGATAGACACAAATTTGCAAAGTATTTATGTTGCTAACCTCCCAAAGTTGAAGCAAGTGTGGAACACGGATCCAAGAGGAATTCTCAACTTCAGAAAACTGCAGAATATAGATGTATATTCTTGTGATAAATTGAGAAATGTCTTTCCGGCTTCTGTGGCCAAAGATGTTCAAAAGATTGAACGCATGTCAGTAAGATTTTGTGAGAGAATGGTGGAAATTATTGCTTGTAAAGATGGATTAGAAGCAAGCAATGAACCATTAGTGTTCCCTGAATTGATCAGCATGAAATTAGATCGGCTACAAAACATGGAGCGTTTCTATAAGGGGAGACATGGTATAAAGTGTCCAAAAATGAATAAGTTGGCAATGGCGTATTGTGAGAAGCTTGAAACATTTCAAATAGAAAGAAGTGCAAGCACAAATGAAGTAGCAGTTTTCTCAACACCTAAAGAGGTATTTCCCAACTTGGAGTATTTGTATATTGACTTTGACCAACCAGAGAAGTGGTTATTGAGCAACACCAAAATGTACAGAATGCACCGTTTAAAAGAGCTTATTATCTCCGGGAAAGTTAGTTTTGACTCTCTCTACCAGTTTCTGTACAGAATGCCAAATCTAGAAAAGTTGTCGCTTCATGAGTTAATGCCAAGTGCAAACATTGCACCCCAGGAAAGATTAGAAACCGTATTACAGTTGAAGGAATTGGTTTTGTCATCTTCATTTATAGAGGATATAGGACTTGAACGACACCCGTTTCTACGGAGACTTGAACTTTTGAGCTTACAAGAGTGCCACAAATTGAGCATTTTAGCTCCTCCCTCGGTATCATTGACTTACTTGACATATTTGGAAGTAAAGTATTGTGGTGGATTAAGGGATTTAATGACATTCTCAACGGCAAAAAGCTTGGTTCAACTTAAGACCATGAAGGTAATCCATTGTGATGAAATAAAGGAAATAATAAGCAATGAGGGAAATGAAAAAGAAAACATCGAAATTGTATTTAGCAATTTGATTACTATAGAACTTGTGACTCTAAAACGGCTCACAAGTTTTTGCAGCAACAAGAATTGTATATTCAAATTCCCTTTATTGGAAATATTGATTGTGAGAGAATGCTCCAAGATGGAAACATTCTCGGAGAATCTGGCAAGTGCGCCAAAGTTGCAAAATAATATACTTGCTGTTGAAGGCGAAGAAGAAGCGAAATGGCAGTGGGAACGCGACTTGAATGGCACCATACAAAAAGTTTTCAAAGATAAGGTTTCTTTCAGATACTCGGAGCATTTGAATAATTCCAGGTATCCTGAATTTATAGAGCAACTATGGCATTGCAATCATTTGGTGTTACAAAACAACTTTCGCAATCTGAAAAGTTTGGAAATAGGATGTGATAGTCTAGAGCATGTAATTCCATCTCATTTACTTCCTTGCTTTGAGAATTTTGAAGAAATATGGGTATGGAATTGTAGTGAAGCACGGGTCATATTTAATATAAGTGATGAGAAAAAAACTTTGGGAATAATCCGTTTGAAAAGATTGAGTTTATATTATCTACCAAAACTAGAGCATGTATGGGACAAGGATCCTGAGGGAATTATTGACCTTCAAGTACTACGGGTTATGTCGGTTACAGGTTGTGATAGTCTGAAAAGTTTATTTCCAGCAGGGGTGGCTAAAAAAGATGTTACCTGCAGACTTGAAGAGCTTGAGGTAACAGAGTGTAGGGAGTTGGTAGAAATATTTTCAAAGGCTGCAGAAGCAGAAGGAGCAACAAAAATGTGTGTGTTTAGTTCTCTCACCTCATTGACTCTAACGGAATTGCCAAAGCTCAAATACTTCTTTCCCGGATCGCACACGCTTGAATGTGAAGAAGATGATGCAGAGGAGCAAGTCCTTATTGAAATTGAAAAGGTTATCCAAATCCCCAGCTTGAAGAAAGTGTCATTCAGTATTGGAGACATCAAGGTTACATGGGATCGAGAGTCTGCAGGAGGGCAATTGCAGTTTGATCAACTAGAAGACTTTGAAGAATTCTTAGACGCTGCTCCTCTATACAGATTCCTTCACAGGGTTCCCAGTATCCAAAAGCTTGCATTTAACCGGTGTAGGTTTAAAGAGATGTTCTCCGCTGAAAGACCGAATGCTGATTACACTCCAATCCTTTTGCACCTCAAAGGATTAGACATGCACAGTATCTTTCACCAATCTGACATATTTGGAATGATGGAGATAGTGTCCAGAGAGGGAGATGAACCAGATGAGGATGAACAAATAATATTTGAGCAGCTCCAGGTTTTGTATCTTCAAGAATTACGTCAGTTGAGATGGTTTTACCCTGGGAATTATACTTTACGTTTTCCATGCCTAGAGCAAGTGCACGTAATCGATTGCAGGTGGATGAAAACTTTCAGTCCAATCAACATAATAGATCATTCAACAAAGTGGTTTTCTGCAGAATATCAATATGAGAAACCTCATCAGTGTTCTGATCTTAATTCTACTGCACACAGGATATTTGAGGAAAAGCTTTGCAACTTAGAACATCTGGAACTAGTTGGAGACGAATGGAAGATGATTTGGCATGAAGTATTTCAGGGAAACCTTTTCTTACACAAGTTAAAAGGTATAGCATTTTTGGCAAAGGCCATGCATAGGGATGTGCACGTCAAGCATGAGAATCATAGAATGCTCAGTGTTGTTGATGTCGGGCGTGAGCTTGGTCACCTCGAGTGTGGCAACTCTAGAGACCCCTTGTGTGAAATTTATCAAGATCGAGAAGAGTCACATCGAGTGTGCTCCTTCTAG 6090 0.3701 MEPVLSIVEKVLGYVVRPVYKQVAYIFQYKQYVDELNHSVANLRREKDGLEHKVVDADSNLKKIEAKVTEWLLEVGEFESKFENFMKDEGHTKSRYPHLWNRHKLSRRSTKMSMKVKKQRDEAPDVDEVAYTENVTSNDVTYSNVGYMDFGSRKSTMNDILALLQDSTVRMIGLHGPGGVGKTTFVKEIATIARNKKMFNEVVIAEITANPNLQQIQEEIAYVLGLRLEGDGENVRADCIRRRLKKEKENTLIILDDLWDKLDLNKLGIPLDDDDDYDDDLSKMKEMKSENEMNLRSKVMKKERPLGDYNRCKILLTSRNEKVLFDEMDVKSTFCIKELDDKDALMLLQKVAGIPNEMSKVKQEFLKYCAGIPMAIITVGRALRDKSDSVWEAALEKLKKQELVGMEKAMENSLKMSYDYLESEELKSIFLLCAQMGHQPLITDLVKYSFGLGILEGVYSLMEARDRIHTSIKKLKDSSLVLGGSSSNHFNIHNMVRDAALSIAHKEKNIFIMRSGKLDWLELEKCTSISICNSDILDKLPNVINCPQLNFFQINNDDSSLRIPNSIFKRMKKLKVLILSGFHLSNLQDLIKGLSNLRMLCLERCNLDGNLSIIGTLKELRILSFSGSQIENFSTELWCLDKLQSLDTRNCCIQRMYLPNSISRLTSLEELYVRKCLIYSVVGKETNSPISLLSILKNLHQLKVVDLSLPCATVFPKDLFFENLYDYKIVIGDIEVLSGGDFRMPNKYEPFRSLALQLKDDTNNIHSQNGIKLLFKTVQNLLLGEINGVKNVIYELNLDGFPDLKHLSITNNFSIKHIFDPKDLAHPPDVFPNLESLCLYKLWNIEMICCGPVTDVSFTKLKTIKINMCAHLKNVISIYMVKLISCVETIDVSDCDSIEEIVEIPQILIREEQDMVPPLFGKLVTISNLHSLNLSSINIHKIWCDQSLSSFCFQNLIKLVVKDCNKLRYLCSLSVASGLSMLKILYVSGCHVMEKIFCTEGNGPHKVFVFPKLEEIHLSKMEMVTDIWQTEMSVNSFCSLISVHIEECEKLEKIFPSHIEGWYASLKKLKVVNCQLVKVIFEIKDSQQRDASGGIDTNLQSIYVANLPKLKQVWNTDPRGILNFRKLQNIDVYSCDKLRNVFPASVAKDVQKIERMSVRFCERMVEIIACKDGLEASNEPLVFPELISMKLDRLQNMERFYKGRHGIKCPKMNKLAMAYCEKLETFQIERSASTNEVAVFSTPKEVFPNLEYLYIDFDQPEKWLLSNTKMYRMHRLKELIISGKVSFDSLYQFLYRMPNLEKLSLHELMPSANIAPQERLETVLQLKELVLSSSFIEDIGLERHPFLRRLELLSLQECHKLSILAPPSVSLTYLTYLEVKYCGGLRDLMTFSTAKSLVQLKTMKVIHCDEIKEIISNEGNEKENIEIVFSNLITIELVTLKRLTSFCSNKNCIFKFPLLEILIVRECSKMETFSENLASAPKLQNNILAVEGEEEAKWQWERDLNGTIQKVFKDKVSFRYSEHLNNSRYPEFIEQLWHCNHLVLQNNFRNLKSLEIGCDSLEHVIPSHLLPCFENFEEIWVWNCSEARVIFNISDEKKTLGIIRLKRLSLYYLPKLEHVWDKDPEGIIDLQVLRVMSVTGCDSLKSLFPAGVAKKDVTCRLEELEVTECRELVEIFSKAAEAEGATKMCVFSSLTSLTLTELPKLKYFFPGSHTLECEEDDAEEQVLIEIEKVIQIPSLKKVSFSIGDIKVTWDRESAGGQLQFDQLEDFEEFLDAAPLYRFLHRVPSIQKLAFNRCRFKEMFSAERPNADYTPILLHLKGLDMHSIFHQSDIFGMMEIVSREGDEPDEDEQIIFEQLQVLYLQELRQLRWFYPGNYTLRFPCLEQVHVIDCRWMKTFSPINIIDHSTKWFSAEYQYEKPHQCSDLNSTAHRIFEEKLCNLEHLELVGDEWKMIWHEVFQGNLFLHKLKGIAFLAKAMHRDVHVKHENHRMLSVVDVGRELGHLECGNSRDPLCEIYQDREESHRVCSF 2029
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01508 2029 Pfam NB-ARC domain 309 421 IPR002182 GO:0043531
Cca01g01508 2029 Pfam NB-ARC domain 157 274 IPR002182 GO:0043531
Cca01g01508 2029 Gene3D Ribonuclease Inhibitor 1163 1418 IPR032675 -
Cca01g01508 2029 PANTHER - 1 904 - -
Cca01g01508 2029 PANTHER - 919 1826 - -
Cca01g01508 2029 PANTHER - 1834 1934 - -
Cca01g01508 2029 Gene3D Ribonuclease Inhibitor 1489 1725 IPR032675 -
Cca01g01508 2029 SUPERFAMILY L domain-like 1527 1900 - -
Cca01g01508 2029 PRINTS Disease resistance protein signature 171 186 - -
Cca01g01508 2029 PRINTS Disease resistance protein signature 369 383 - -
Cca01g01508 2029 PRINTS Disease resistance protein signature 245 259 - -
Cca01g01508 2029 PRINTS Disease resistance protein signature 977 993 - -
Cca01g01508 2029 Gene3D - 135 332 IPR027417 -
Cca01g01508 2029 Gene3D Ribonuclease Inhibitor 524 906 IPR032675 -
Cca01g01508 2029 Gene3D Ribonuclease Inhibitor 907 1162 IPR032675 -
Cca01g01508 2029 SUPERFAMILY L domain-like 492 900 - -
Cca01g01508 2029 PANTHER RPP4C4 1 904 - -
Cca01g01508 2029 PANTHER RPP4C4 1834 1934 - -
Cca01g01508 2029 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 139 433 IPR027417 -
Cca01g01508 2029 Coils Coil 33 67 - -
Cca01g01508 2029 PANTHER RPP4C4 919 1826 - -
Cca01g01508 2029 SMART AAA_5 168 344 IPR003593 -
Cca01g01508 2029 Gene3D - 338 422 IPR042197 -
Cca01g01508 2029 SUPERFAMILY L domain-like 925 1154 - -
Cca01g01508 2029 SUPERFAMILY RNI-like 1098 1411 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Cca01g01508 Cca-Chr1 32377125 32396999 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01508 169 507 WRKY Transcription Factor Family AT5G45050 25.287 4.30e-06 50.1
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01508 - - ccaj:109793741 2650.54