Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01505 ATGTCCTTCAATCAATCAAAGTCGGAGAAGAACGACGCGGTTTACCGACGAACCGGGCGATCCTCTAGCTTCAATCAGCAGAGAGGAAACTACGGCAAGGGTGGCGGCGGTGGCGGTGGCGGGACCGCGCCGTCGATCAATTCTGTCTCCTCTACCCGGAGTTTTAACAAGAAGTCTAATAATGCACAAGGTGGGCAATCTAGGGTAAACCCCTCCCCAGGGAATTCGACAGAGTCCAATATTGCATCTGCTGCCCGGACCATTAATAATGGTACCCATGTACAGGCGCAATTACATGGAGCATCGGATGGGCCAGTTACAAAGTCATCTGAATCGCCAACTGCACATAGGAGTGCTGGAATTGTTTCCAAAGCTCCAACCTCGCTACTGCCCCCCTTGATTTCTGATCATGCCCCTCCCACAAGCCCTGCTAAGGGAGATGCATCTAAGGCATTCCCCTTTCAATTTGGATCCATAGTTCCTGGCTTTGTTAATGGGATGGCAATTCCTGCTCGTACAAGTTCGGCTCCTCCTAATTTAGATGAGCAGAAGCGTGATCAGGCTCTTCATGACTCTTATAAGCCTGTTCCTTCCGTGCCAATTCCTCCTGTTCCAAAGCAGCAGCAACCACCTAGGAAAGATGCTGGTGTCACTGAGCAATCTAATGTCGGAGAGACTCATATAGGGGGGACTAAGGCCAAAAGGGATCCTCAGGTGTCAGCTTTGACCCCAGCAAACCAGATGCTGAAGCCCTCTGTTGTTCCTGTAACTGGAATTTCAATGTCAACACCATATCACCAATCACAGGCTCCTTTACAGTTTGGTGGTGCTAATCCTCAGATTCAATCTCAAGGTATGTCAACGGCGCCCCACCAGATGCCTATACCAATGCCTTTACCCATTGGCAATGCTACACAAGTGCAACAGCCAGTTTTTGTTCCAGGTCTTCAACCACATCCGATGCATCCTCAGGGGATTATGCATCAAGGCCAAAACATGAGTTTTGCTCCTCAAATGGGTCATCAGCAAATGGGTCATCATTTCAACATGGGCATTGGCATCAACCCTCAATATCCCCCCCAGCAGCAAGGAGGAAAATTTGCTGGTCCTCGAAAAACTACTCCGGTAAAGATAACTCATCCCGAGACCCATGAAGAGCTGAGGCTTGATAAAAGGACAGATGCATATCCAGATGGTGGGTCATCCGGTGCTGCTAGGTCACATCCTACCATACCTTCTCAATCCCAGCCTATTAAATCTTTTCCTGCTTCTCATCCTGTGAACTATTATAAATCCAGCTCGCATAATACCAATTCTCTCTATTATCCACCTGGTTCTCTTCCATTAACAAGTAGCATGATAACTCCTAATTCTCAGCCACCAATATTTAATTATCCTGTGAACCATGGTCCACAAGTTGCAAGTTTCATGAATTCATCACCAGTTGGTTCCCCGCCTATTAATAAAGCTAGCACTTCAACAGGGGTTGCGTCTGTGACCATTAAGCCAAGCAGTATGCCTGCTGTTGTGGGCTCATCATTGTCCAATTCTAGTATTTCTGGTGTTCAAAATGGAGAATCCCCCAGTTCAACATCATTTTGTGATGCTAACTCCTCTGTGCAGCAAAAAGCGTCTGAAATTTGTTCAGAAATCTCTGGACAACAGTCTAAATTGTCTGGTGATTCTGTCCCAGTTGTTTCCAATAATGAAGGCGGGAGAGAATCTCTTAGTAGGTCCAACTCTTCGAAGGATAAAAAACCAGGGAAAAAAGGTCAATTATCACAGCATCAGGTTTCTGTACAATCTCCCACAGCAGCTAATATTCCATCTCAAGCTGTTGACTGTGGTATATCTGATACCGGAGTTCCCGAAACTGTTGGAACTGAAACAAGCCACTCTCCGGCAATTACCACTGAAGATCTTCCTTTGTCTGATTCAATATCTAGTAGCATTTCTACTGCTGTTGAGTTGAAGACCAATGGATTTGCGGAGATCTCTGCTTGTGTTTCAGGTGAAGGATATGGTGCACAATCTGCTGACAGAGTGTACAATCATAAGCCTGATAATGATTTAGCTGAAGGAAATATTGGCACAACAGAAAAGCATTTTGCTGTTCTTCCAGAAACAACGTCAAAGCATGTTAAGGATGCCTCAGAGAATTCTGGTGGTGAGTTAGTTACCAAGGATAGACTGATTTTAGAACCGAATAAGGGGAAACCTACATCTAAAGGGAAGAAGAAAAGAAGAGAGATACTTCAGAAAGCAGATGCTGCTGGGTCGACATCTGATCTTTATAATGCATACAAGGGACCTGAAGAAAAGAAAGAAGCTGTCTTAAGTTCTGAGAGCACAGAAAGTGCTTCTACTTCTCAAAGTTTGAAGCAGTTGCCTAAAGATGCTGCTCAGTCAGATTCTTTAGCAAGTGAGAAATGTGGTCACAGTAAAGCTGAACTTGATGACTGGGAGGATGCTGCTGACATGTCTACCCCCAAACTGGAGGTTCATGACAAATCTCAACAAGTTGGTGATGGAAGTGGAAGTACAGCAAGGAAGTACTCACGTGATTTCCTTCTAAAATTTGCAGAGCAATGCACTGATCTTCCTGAAGGTTTTGAAATCACTTCAGACATCGCTGAAGTTTTGATGGGTGCCAATATTGGTGGTTCTCATGGTTATGAGCGTGATTCACATCCTGGTCCTGGAAGAATTGTAGATAGACAAGGTGGGATGTCTCGGATGGATCGCCGCGGGGATGTTATAATGGAGGATGACAGATGGAATAAAGTTTCTGGTGGTTTTCGTTCTGGACGAGGCTTGGATGGCACTGGAGGCAATGGGGGATTTCGATCTGGCCAAGGAGGCAATTTTGGTGTTTTAAGGAACCCTCGTGCACAGACACCACTACAGTATGCTGGAGGGATCCTGTCTGGGCCAATGCAATCTGTGGGAAGTCAGGGTGGAATGCAAAGAAATAGCCCTGATGGGGAGAGGTGGCAGCGTTCTCCTGGCTTTCAGCAGAGGGGTTTAATTCCTTCTCCTACCCAAACTCCTTTACAGATGATGCACAAAGCTGAAAAGAAGTATGAAGTGGGTAAAGCATCAGATGTGGAAGAGGTAAAACAGAGGCAGTTGAAAGCCATCCTGAACAAACTGACTCCTCAGAATTTTGATAGACTTTTTGAACAGGTGAAAGCAGTTAATATTGACAATGCAGTCACCCTCACTGGTGTCATCTCACAAATATTTGAGAAGGCTCTGATGGAACCTACCTTTTGTGAAATGTATGCTAACTTCTGTTTTCATCTGGCTTCTGAGTTGCCTGATTTCAGTGAGGACAATGAAAAGATAACTTTTAAAAGGTTATTATTAAACAAGTGCCAGGAAGAATTTGAGAGGGGTGAAAGAGAGCAAGAAGAAGCAAATAAGGCTGATGAGGGTGAGGTTAAGCAGTCTGCTGAGGAAAGAGAAGAAAGAAGAACAAAGGCAAGAAGACGCATGTTGGGAAACATCAGATTAATTGGAGAATTGTATAAGAAGAAAATGTTGACAGAGAGGATAATGCATGAGTGTATCAAGAAGTTACTGGGTCAGTATCAGGATCCAGATGAGGAAGACATTGAAGCTTTGTGCAAGCTAATGAGTACTATCGGGGAGATGATTGACCATCCCAAAGCCAAGGAACATATGGATGCATATTTTGAAAGGATGAAACTATTATCAAACAATATGAATTTATCTTCTAGGGTGAGGTTCATGTTGAAGGATTCCATTGATTTAAGAAAGAATAAATGGCAGCAAAGGAGGAAAGTAGAAGGTCCAAAGAAGATTGAAGAGGTACACAGGGATGCTGCCCAGGAGAAGCAGGCCCAAGCTGGTAGGCCAGGTCGTGGTCTTGGCAACAATCAATCAGCAAGAAGGAATCCGATGGATTTTGGTCCAAGAGGACCATCTATGCTGTCATCTCCTAATCAAATGGGTGGAATGCGTGGTCTTCCTACTCAAGCTCGTGGGTACGGTTCTCAGGATGCTCGTTTTGAGGAACGACAATCTTTTGAGGCTAGGACCTTGTCAGTTCCTTTGCCACAAAGACCCTTGGGAGATGATTCTATAACCTTGGTTCCCCAAGGTGGTCTTGCTAGGGGAATGTCTACTAGAGGATCAACAGCAATTTCCAATTCGCCAATTTCTGATCCTGTCCCTGGAGACCCTCATAGAATGACTGTTGGTCCTAATGGTCACAGTAATTTACCAGAGCGTGCACCATATGTTAATGATAGGTCTTCAGGTCCATCTGCTTATGATCAATCAAGTGCTCCAGAGCGTAATATAAACCATGGAAACAGAGACTTGAGGAGTGCTGATCGGAATCATGACAGACTTGTTGTAACATCATCTACTGCTCAATTGCAAAGTTCAGTAGTCTCTCAGAATGTTTCTTCAGAGAAGATTTGGCCAGAAGAGCAGCGTCTGAGGGACATGTCCTTGTCAGCAATCAGAGAATACTACAGTGCTAGAGATGAGAACGAACTTGCTATGTGTGTCAAAGATTTGAACTCTCCAAGCTTCCACCCTTCCATGGTTTCTCTCTGGGTAACAGATTCATTTGAGAGAAAGGACACAGAGAGAGATCTTTTGGCGAAACTGCTTGTCAACCTAGTGAAATCTCAGGATGGCTCCTTGAGTCAATCCCAGATCATCAAAGGGTTTGAATCTGTTCTGAGTACATTGGAGGATGCTGTTAATGATGCTCCTAGAGCACCAGAGTTTCTCGGCCGAATTTTTGCCAAAGCCATTACTGAGAGTGTAGTTACTTTGAGTGAGATTGGTGGATTAATACATGATGGTGGAGAGGAGCCAGGCAGTCTCTTAGAAGTTGGACTTGCAGCAGATGTTCTTGGAAGCACGTTGGAGGCAATTCAATCTGAGAAGGGGGATGCGTTTCTGAAAGAGATCCGTTCAAACTCTAACTTGCGTTTGGAAACTTTCCGGCCACCTAATTCCAAATCATCAAGGAAGTTGGAAAAATTTATTTAG 5034 0.446 MSFNQSKSEKNDAVYRRTGRSSSFNQQRGNYGKGGGGGGGGTAPSINSVSSTRSFNKKSNNAQGGQSRVNPSPGNSTESNIASAARTINNGTHVQAQLHGASDGPVTKSSESPTAHRSAGIVSKAPTSLLPPLISDHAPPTSPAKGDASKAFPFQFGSIVPGFVNGMAIPARTSSAPPNLDEQKRDQALHDSYKPVPSVPIPPVPKQQQPPRKDAGVTEQSNVGETHIGGTKAKRDPQVSALTPANQMLKPSVVPVTGISMSTPYHQSQAPLQFGGANPQIQSQGMSTAPHQMPIPMPLPIGNATQVQQPVFVPGLQPHPMHPQGIMHQGQNMSFAPQMGHQQMGHHFNMGIGINPQYPPQQQGGKFAGPRKTTPVKITHPETHEELRLDKRTDAYPDGGSSGAARSHPTIPSQSQPIKSFPASHPVNYYKSSSHNTNSLYYPPGSLPLTSSMITPNSQPPIFNYPVNHGPQVASFMNSSPVGSPPINKASTSTGVASVTIKPSSMPAVVGSSLSNSSISGVQNGESPSSTSFCDANSSVQQKASEICSEISGQQSKLSGDSVPVVSNNEGGRESLSRSNSSKDKKPGKKGQLSQHQVSVQSPTAANIPSQAVDCGISDTGVPETVGTETSHSPAITTEDLPLSDSISSSISTAVELKTNGFAEISACVSGEGYGAQSADRVYNHKPDNDLAEGNIGTTEKHFAVLPETTSKHVKDASENSGGELVTKDRLILEPNKGKPTSKGKKKRREILQKADAAGSTSDLYNAYKGPEEKKEAVLSSESTESASTSQSLKQLPKDAAQSDSLASEKCGHSKAELDDWEDAADMSTPKLEVHDKSQQVGDGSGSTARKYSRDFLLKFAEQCTDLPEGFEITSDIAEVLMGANIGGSHGYERDSHPGPGRIVDRQGGMSRMDRRGDVIMEDDRWNKVSGGFRSGRGLDGTGGNGGFRSGQGGNFGVLRNPRAQTPLQYAGGILSGPMQSVGSQGGMQRNSPDGERWQRSPGFQQRGLIPSPTQTPLQMMHKAEKKYEVGKASDVEEVKQRQLKAILNKLTPQNFDRLFEQVKAVNIDNAVTLTGVISQIFEKALMEPTFCEMYANFCFHLASELPDFSEDNEKITFKRLLLNKCQEEFERGEREQEEANKADEGEVKQSAEEREERRTKARRRMLGNIRLIGELYKKKMLTERIMHECIKKLLGQYQDPDEEDIEALCKLMSTIGEMIDHPKAKEHMDAYFERMKLLSNNMNLSSRVRFMLKDSIDLRKNKWQQRRKVEGPKKIEEVHRDAAQEKQAQAGRPGRGLGNNQSARRNPMDFGPRGPSMLSSPNQMGGMRGLPTQARGYGSQDARFEERQSFEARTLSVPLPQRPLGDDSITLVPQGGLARGMSTRGSTAISNSPISDPVPGDPHRMTVGPNGHSNLPERAPYVNDRSSGPSAYDQSSAPERNINHGNRDLRSADRNHDRLVVTSSTAQLQSSVVSQNVSSEKIWPEEQRLRDMSLSAIREYYSARDENELAMCVKDLNSPSFHPSMVSLWVTDSFERKDTERDLLAKLLVNLVKSQDGSLSQSQIIKGFESVLSTLEDAVNDAPRAPEFLGRIFAKAITESVVTLSEIGGLIHDGGEEPGSLLEVGLAADVLGSTLEAIQSEKGDAFLKEIRSNSNLRLETFRPPNSKSSRKLEKFI 1677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01505 1677 MobiDBLite consensus disorder prediction 710 814 - -
Cca01g01505 1677 Pfam MA3 domain 1495 1602 IPR003891 -
Cca01g01505 1677 MobiDBLite consensus disorder prediction 1381 1395 - -
Cca01g01505 1677 MobiDBLite consensus disorder prediction 577 591 - -
Cca01g01505 1677 SMART if4_15 1041 1263 IPR003890 GO:0003723|GO:0005515
Cca01g01505 1677 MobiDBLite consensus disorder prediction 1264 1324 - -
Cca01g01505 1677 MobiDBLite consensus disorder prediction 517 536 - -
Cca01g01505 1677 MobiDBLite consensus disorder prediction 547 616 - -
Cca01g01505 1677 MobiDBLite consensus disorder prediction 1 149 - -
Cca01g01505 1677 MobiDBLite consensus disorder prediction 781 802 - -
Cca01g01505 1677 MobiDBLite consensus disorder prediction 406 424 - -
Cca01g01505 1677 MobiDBLite consensus disorder prediction 978 1015 - -
Cca01g01505 1677 MobiDBLite consensus disorder prediction 1132 1161 - -
Cca01g01505 1677 MobiDBLite consensus disorder prediction 213 227 - -
Cca01g01505 1677 MobiDBLite consensus disorder prediction 1380 1454 - -
Cca01g01505 1677 MobiDBLite consensus disorder prediction 1428 1443 - -
Cca01g01505 1677 ProSiteProfiles MI domain profile. 1489 1613 IPR003891 -
Cca01g01505 1677 MobiDBLite consensus disorder prediction 377 395 - -
Cca01g01505 1677 SUPERFAMILY ARM repeat 1486 1675 IPR016024 -
Cca01g01505 1677 MobiDBLite consensus disorder prediction 974 1015 - -
Cca01g01505 1677 SUPERFAMILY ARM repeat 1037 1265 IPR016024 -
Cca01g01505 1677 MobiDBLite consensus disorder prediction 547 576 - -
Cca01g01505 1677 Gene3D - 1041 1276 - -
Cca01g01505 1677 Pfam MIF4G domain 1041 1263 IPR003890 GO:0003723|GO:0005515
Cca01g01505 1677 Gene3D - 1485 1677 - -
Cca01g01505 1677 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 114 1667 IPR045208 GO:0003743
Cca01g01505 1677 MobiDBLite consensus disorder prediction 1264 1287 - -
Cca01g01505 1677 MobiDBLite consensus disorder prediction 1346 1368 - -
Cca01g01505 1677 MobiDBLite consensus disorder prediction 362 424 - -
Cca01g01505 1677 MobiDBLite consensus disorder prediction 192 238 - -
Cca01g01505 1677 SMART ma3_7 1490 1604 IPR003891 -
Cca01g01505 1677 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4G-LIKE 114 1667 - -
Cca01g01505 1677 MobiDBLite consensus disorder prediction 43 117 - -
Cca01g01505 1677 MobiDBLite consensus disorder prediction 592 614 - -
Cca01g01505 1677 Coils Coil 1123 1155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01505 Cca-Chr1 32222702 32232358 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01505 1 1676 Eukaryotic Initiation Factors Gene Family AT3G60240 47.354 0.0 1301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01505 K03260 - gmx:100798562 2617.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01505 01 32222702 32232358 Cca01g01505 01 32222702 32232358 ECH
Cca01g01505 01 32222702 32232358 Cca07g01158 07 28365073 28365603 PCT