Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01499 ATGGCTTGGCATTCTAATCCCAGAACCAGTAGGCCTCCTGCTGTTAAAACCACCCCTCAGGGCACCAATTTCCCAAAAAATTTTAGGGAAACCAGGACTTGTTTTAAATGTGGCCGCAAAGGTCACTTAGCAAAGTTCTGTAGAATCTCCTCTAAAGTTAGAGAACTCAATCTTGATCCTACTATCCAGGATCAGTTAAACAATCTCTTGATCAACTCATCTGATAACAGTGATGAAGATGTTCATAATCAAATGTCCTCTTCCGAAGATGATCAAGCCGATGACGACCTTTCCTCCACCAGTGATGAAGGCTCCGACTCTCCTCTCAtcaatgtcattcacaatgatgagcaaaatcttctcctcgatgttttaaaatctattcaagACGTAGCCATGGGAAGAAGACCTGCAAGGTGTTATCGACAAATTAAGAACAAGCCGTACCCGAAGTCGCGGTTTTGCCGTGGTGTTCCTGATCCCAAGATCAGGATTTATGATGTTGGTATGAAGAAGAAAGGTGTTGATGAGTTTCCCTTCTGCGTGCATTTGGTTAGTTGGGAGAAGGAGAATGTTTCCAGCGAGGCGCTGGAAGCTGCTAGGATTGCTTGCAACAAGTACATGGCGAAATTTGCTGGAAAGGATGCATTCCACTTGAGGACGGGTATGCGAGGTGCGTTTGGAAAGCCGCAGGGTACTTGTGCCAGAGTGGCTATTGGCCAGGTCCTCCTTTCTGTCCGCTGTAAGGACAGCAACAGCCACCATGCACAAGAGGCCCTTCGTCGTGCTAAGTTTAAGTTCCCTGGTCGCCAAAAGATTATTGTTAGCAGGAAGTGGGGGTTCACCAAGTTTAATCGTACTGATTATCTGAAGCTCAAGTCAGAGAACAGGATTATGCCTGATGGTGTGAATGCCAAGGTAATGTAG 927 0.4358 MAWHSNPRTSRPPAVKTTPQGTNFPKNFRETRTCFKCGRKGHLAKFCRISSKVRELNLDPTIQDQLNNLLINSSDNSDEDVHNQMSSSEDDQADDDLSSTSDEGSDSPLINVIHNDEQNLLLDVLKSIQDVAMGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRTDYLKLKSENRIMPDGVNAKVM 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01499 308 PANTHER 60S RIBOSOMAL PROTEIN L10 219 307 IPR001197 GO:0003735|GO:0005840|GO:0006412
Cca01g01499 308 SUPERFAMILY Retrovirus zinc finger-like domains 26 49 IPR036875 GO:0003676|GO:0008270
Cca01g01499 308 MobiDBLite consensus disorder prediction 1 25 - -
Cca01g01499 308 SMART c2hcfinal6 33 49 IPR001878 GO:0003676|GO:0008270
Cca01g01499 308 MobiDBLite consensus disorder prediction 72 110 - -
Cca01g01499 308 Gene3D - 22 83 - -
Cca01g01499 308 Pfam Ribosomal protein L16p/L10e 144 217 IPR016180 GO:0003735|GO:0005840|GO:0006412
Cca01g01499 308 Pfam Ribosomal protein L16p/L10e 221 274 IPR016180 GO:0003735|GO:0005840|GO:0006412
Cca01g01499 308 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 133 220 - -
Cca01g01499 308 CDD Ribosomal_L16_L10e 173 274 IPR016180 GO:0003735|GO:0005840|GO:0006412
Cca01g01499 308 PANTHER 60S RIBOSOMAL PROTEIN L10 133 220 IPR001197 GO:0003735|GO:0005840|GO:0006412
Cca01g01499 308 Gene3D Ribosomal protein L10e/L16 221 285 IPR036920 GO:0003735|GO:0005840|GO:0006412
Cca01g01499 308 Gene3D Ribosomal protein L10e/L16 133 220 IPR036920 GO:0003735|GO:0005840|GO:0006412
Cca01g01499 308 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 219 307 - -
Cca01g01499 308 Gene3D - 286 308 - -
Cca01g01499 308 ProSiteProfiles Zinc finger CCHC-type profile. 34 48 IPR001878 GO:0003676|GO:0008270
Cca01g01499 308 SUPERFAMILY Ribosomal protein L16p/L10e 136 281 IPR036920 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01499 Cca-Chr1 32146206 32153918 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01499 133 308 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 77.500 3.15e-110 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01499 K02866 - pvy:116105818 345.895