LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca01g01498	ATGCATCTCACTCACCTGTGCCTTATCATGGCCTCAGATTATGATAAACTAGAGCCACTTCACGCAACCCCACAACCCCAAAAGAAAGTTAAGGCCAAAAAACACCTTCATGGGGCATGTGGAGGCCATGTTGTTGCTTCCCTTCATGGTTCTTTGACCAAGTTGTGTGACACAAGGTGGTGGAACAACCTATGCCAACATGGGGCAAGAGAAACCAAGCAGCTCAAGAGTTCTTGTGTGTTTCATGACATGGAGGGTGTGCAACTTTTTTCCAAGATTGGAAGGGATAGCAACAATCCAAGGATTTTCAGCTATGCTGAGCTTTACATAGGTTCGAGGGGTTTCTCTGAGGAAGAAGTTCTGGGGAGTGGAGGGTTTGGCAAAGTGTACAAAGCTGTTATGCCTAGTGATGGAACAGTTGTGGCCGTGAAGTGTTGCTTGGCAGGGAAAGGTGGCCAATTTGAGAAGACTTTTGCTGCGGAATTAGCAGCAGTGGCACACCTTCGCCACAAGAACCTTGTTCCCTTGAGGGGTTGGTGTGTTTTCGAGGATCAGCTTTACCTTGTGTATGACTACATGCCCAATCTCAGCCTTGATCGGGTGCTATTTCGTAAGAACTTGAAGGAGGGGGAACTTGGATGGGTGAGGCGTGGGAAGATTGTGAAGGGTTTGGCAGGTGCATTGCACTATTTGCATGAACAGTTGGAGACTCAAATCATTCATAGGGATGTGAAGACCAGCAATGTGATGCTTGATTCACACTACAATGCTAGGTTGGGTGACTTTGGCTTGGCAAGGTGGCTAGAGCATGAGCTTGAGTACGAGTATGAGACAAGGAAAGTATCATCAACATCAAGCAAGTTTGAGCATTTCAGGATGAGTGAGACCACAAGGATTGGTGGCACAATAGGGTACTTGCCCCCTGAGAGCTTCCAGAGAAGGAGCATTGCTACCTCAAAATCTGATGTGTTCAGCTTTGGGATAGTTGTGTTGGAGGTGGTGTCTGGCAGGAGGGCCATTGATCTCACATACCCTGATGAGAAAATCATTTTGCTTGATTGGGTGAGAAGGCTTAGTGATGAAGGGAGGCTTGTTGGTGCTGGGGACACAAGGCTTATGGATGGTTCCTACATGGTTTTTGAGATGGAGCACATGATTCATGTAAGCCTCTTGTGCACACTCCATGACCCTCAATTGAGGCCAAGCATGAAGTGGGTTGTGGAAGCACTTTCTGACATGTCAAACAAATTGCCAAGACTCCCTTCATTCCACTCCCATCCCATGTATATCTCTTTGTCCTCCTCTTCTGAGACTAGTCCTAGCACCACAAAAGGAACTGGCTCAGGCTCAGCAACAGAAAATTCTAGCAATCATACTTTTTCCAAATCCAAATATGTCACAGCCACAGGAGAGACTATATATGTGACTGCTGAAGTTGAACAAAGGAACAGTGGAATTAGCCCTTCTAAGAAGAGAATGCATCATCAGTCTTCATTTAATGTGGTGGAAACACCTAGGGAGATACCATACAAGGAGATTGTGTCAGCCACAGATAACTTCTCAGAGTCCAAAAGGGTGGCTGAGCTAGACTTTGGAACAGCCTACCATGGCATCCTTGATGGCCACTACCATGTCATGGTAAAACGCCTTGGCTTGAAGACATGCCCTGCATTGCGCCAGAGATTCTCCAATGAGCTCAGGAACTTGGCAAAACTTCGCCACAGGAATTTGGTGCAGCTTAGAGGGTGGTGCACTGAGCAAGGAGAGATGCTTGTGGTGTATGATTACTCTGCTACAAGAATCCTGAGTCACCAACTTCACCATCACAACAACAATGGTACTAAAAGTGGCTATTCTGTACTCAAATGGCAACATAGGTATAGCATAGTGAAATCACTTGCATCAGCACTTCTCTATCTGCACGAGGAATGGGATGAGCAAGTCATTCACAGGAACATAACCTCTTCAGCAGTGACTCTTGAACCTGACATGACCCCAAGACTAGGTAGTTTTGCTCTGGCTGAATTTTTGTCAAGGAATGAGCATGGTCATCATGTGATCACCACAAGGAGCAAGTCGGTTTGCGGGATTTTTGGCTATATGTCGCCGGAATATGTGGAATCCGGCGAGGCAACCGCAGCTGCTGATGTTTATAGTTTTGGTGTGGTGGTGCTTGAGGTTGTAAGTGGACATATGGCTGTGGATTTTAGGCAACCTGAGGTGCTATTGGTAAAGAAGGTTCATGAATTTGAGATGAGAAAAAAACCACTTGAGGCATTAGCAGATATAAGACTAAATGGAGAGTACAATTACAAGGAACTAGTGAGGTTGGTAAGGTTAGGAGTTGCATGCACTCGTTCTGACCCTAAGTTAAGACCAAGCACCAGACAGATAGCAAGCATTCTTGATGGCAATGACAAATTAATCATGGGGGAGAGCATGGAGAGCAGGGAAGAATGGAGAGAAAGAAATGATTGCTCTTTGTCACTGGTTAAGAGAATCCAAGCTCTGGGAATACAATGA	2523	0.4586	MHLTHLCLIMASDYDKLEPLHATPQPQKKVKAKKHLHGACGGHVVASLHGSLTKLCDTRWWNNLCQHGARETKQLKSSCVFHDMEGVQLFSKIGRDSNNPRIFSYAELYIGSRGFSEEEVLGSGGFGKVYKAVMPSDGTVVAVKCCLAGKGGQFEKTFAAELAAVAHLRHKNLVPLRGWCVFEDQLYLVYDYMPNLSLDRVLFRKNLKEGELGWVRRGKIVKGLAGALHYLHEQLETQIIHRDVKTSNVMLDSHYNARLGDFGLARWLEHELEYEYETRKVSSTSSKFEHFRMSETTRIGGTIGYLPPESFQRRSIATSKSDVFSFGIVVLEVVSGRRAIDLTYPDEKIILLDWVRRLSDEGRLVGAGDTRLMDGSYMVFEMEHMIHVSLLCTLHDPQLRPSMKWVVEALSDMSNKLPRLPSFHSHPMYISLSSSSETSPSTTKGTGSGSATENSSNHTFSKSKYVTATGETIYVTAEVEQRNSGISPSKKRMHHQSSFNVVETPREIPYKEIVSATDNFSESKRVAELDFGTAYHGILDGHYHVMVKRLGLKTCPALRQRFSNELRNLAKLRHRNLVQLRGWCTEQGEMLVVYDYSATRILSHQLHHHNNNGTKSGYSVLKWQHRYSIVKSLASALLYLHEEWDEQVIHRNITSSAVTLEPDMTPRLGSFALAEFLSRNEHGHHVITTRSKSVCGIFGYMSPEYVESGEATAAADVYSFGVVVLEVVSGHMAVDFRQPEVLLVKKVHEFEMRKKPLEALADIRLNGEYNYKELVRLVRLGVACTRSDPKLRPSTRQIASILDGNDKLIMGESMESREEWRERNDCSLSLVKRIQALGIQ	840

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca01g01498	840	Gene3D	Phosphorylase Kinase; domain 1	481	596	-	-
	Cca01g01498	840	Pfam	Protein tyrosine and serine/threonine kinase	524	799	IPR001245	GO:0004672\|GO:0006468
	Cca01g01498	840	ProSiteProfiles	Protein kinase domain profile.	115	429	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Cca01g01498	840	ProSiteProfiles	Protein kinase domain profile.	520	809	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Cca01g01498	840	Pfam	Protein kinase domain	116	341	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Cca01g01498	840	Gene3D	Transferase(Phosphotransferase) domain 1	193	419	-	-
	Cca01g01498	840	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	239	251	IPR008271	GO:0004672\|GO:0006468
	Cca01g01498	840	SMART	serkin_6	115	429	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Cca01g01498	840	PANTHER	RECEPTOR LIKE PROTEIN KINASE S.2	1	839	-	-
	Cca01g01498	840	ProSitePatterns	Protein kinases ATP-binding region signature.	121	150	IPR017441	GO:0005524
	Cca01g01498	840	Gene3D	Transferase(Phosphotransferase) domain 1	602	824	-	-
	Cca01g01498	840	SUPERFAMILY	Protein kinase-like (PK-like)	493	802	IPR011009	-
	Cca01g01498	840	PANTHER	-	1	839	-	-
	Cca01g01498	840	MobiDBLite	consensus disorder prediction	431	458	-	-
	Cca01g01498	840	SUPERFAMILY	Protein kinase-like (PK-like)	98	441	IPR011009	-
	Cca01g01498	840	Gene3D	Phosphorylase Kinase; domain 1	90	192	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca01g01498	Cca-Chr1	32135916	32138907	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca01g01498	510	808	Receptor kinase-like Gene Family	AT3G53810	38.158	6.88e-52	191

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Cca01g01498		PK_Tyr_Ser-Thr	1.5e-27	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca01g01498	-		-	gmx:100781955	1465.67