Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01497 ATGGACGAGTCATGGCTAAAGTGCCTTTCTTTTTTGGAAATGGATGACAACCTTTTTTCAAGTGAATATAACATGAACTCTCTTGAAGAAGAGTTAGAGAAAGAGAATTCAGTGCAGGGTTCAGAAATCTCATGGAAAAATATTCACTCTTATTCAAATCTCACTACAGAAAGCACCACCCATGTAAGCACCAACATGGGAAATTCTTCATCTTTGGAAGGGAACACTGGCTTTGATCATGTCACAAGTCTCAAACCACATGCTTCTTCTCCACAGAAACCAATGCCTTGCAACCTGTCTTTTGAGGATTCCACTTTAGTGCCAAATGTTCCCAAGAAAACATGCCAATATTTTCATGGTGAACATTCCCAAGAAAAGCCACAGAATATAAAACCCAAGAAGGGTAGATCCTGCTCCCAGACACATGAGCACATAATGGCTGAAAGAAAAAGGAGAGAGAATATCACCAAAATGTTCATAGCTCTTTCAGCCCTTATTCCGGGCTTGAAAAAGATGGACAAGGCTTCGGTCCTTAGCACCGCCATAGAGTATGTGAAACATCTTCAGCAGCGTGTGAAAGTTTTGGAGCAAGAGAAGAAGAGAAAGATAGAAACCATAGGATGCTTCAAAACAAACAAAACCAATGTTGCTGATGACTACGTTTCATGTACCTATGACGTCTTAGATGACAAACCTATCAAGATATGTCCTAAAGTGGAAGCAAGAGTCTCAGGAAAAGATGTACTCATCAAAGTAATGTGTGAGAAACAAAAGGGCATTGTTGGTAAGCTACTGGCCAAGGTTGAAGCTCATGATCTCTCCGTAGTGTGTACCAATGTTTTGCCTTTTGGAAATTCTGCTCTCATCATTACTACCATTGCTAAGATGGACCATGAATTCAGCATGACAATGGACAACCTAGCGAAAATGTTGACAGAGGATTTATTGGAGTGCTGTAAGTTGCAACAAAAATGA 975 0.4021 MDESWLKCLSFLEMDDNLFSSEYNMNSLEEELEKENSVQGSEISWKNIHSYSNLTTESTTHVSTNMGNSSSLEGNTGFDHVTSLKPHASSPQKPMPCNLSFEDSTLVPNVPKKTCQYFHGEHSQEKPQNIKPKKGRSCSQTHEHIMAERKRRENITKMFIALSALIPGLKKMDKASVLSTAIEYVKHLQQRVKVLEQEKKRKIETIGCFKTNKTNVADDYVSCTYDVLDDKPIKICPKVEARVSGKDVLIKVMCEKQKGIVGKLLAKVEAHDLSVVCTNVLPFGNSALIITTIAKMDHEFSMTMDNLAKMLTEDLLECCKLQQK 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01497 324 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 142 205 IPR036638 GO:0046983
Cca01g01497 324 Gene3D - 139 207 IPR036638 GO:0046983
Cca01g01497 324 SMART finulus 145 194 IPR011598 GO:0046983
Cca01g01497 324 Coils Coil 178 205 - -
Cca01g01497 324 Pfam Helix-loop-helix DNA-binding domain 143 189 IPR011598 GO:0046983
Cca01g01497 324 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 139 188 IPR011598 GO:0046983
Cca01g01497 324 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 321 - -
Cca01g01497 324 PANTHER BHLH TRANSCRIPTION FACTOR 1 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01497 Cca-Chr1 32096700 32099590 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01497 7 315 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 33.841 5.97e-44 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca01g01497 HLH 3.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01497 - - gmx:100815351 392.889