Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01492 ATGGACGAATCATGGGAAAAATGGTTTTCTGATTTGGAAATGGATGATGGGTGTGATATATTCAATGAACACGACATTGTCTCTGCTGAGGAAGAGTTGAAACACAACATTGGCAATGCTTCATGTTTGGAAGAGAACACAGGAAATACTTCTTCAGAGAAACCAATGTTTGCCTTCCACAATCTCTCTTTTGAGGATACAATTGAAGTGCCAAATATTACTTCAAAATCCAAGAGAATAGAACCTGAGAATGGAAAGTGCAATAAGAGGGTAAGAAACAGTTCTGAGACCAATGATCATGTAATTGCTGAGAGGAAAAGGAGAGAGAATCTCACCAGATTGTTCATTGCACTTTCGGCCATTATTCCTGGATTGAAAAAGATGGACAAGTTGTCTATCCTCAACAACACTATTGATCGTGTGAAATATCTTCAAAATCGTATAAAAGTTTTGGAGGAAGAGAACCAAAAGAGAAGGATGGAATCAATGACGACATTAGCAAATAAAAAACCTAATGTTAATGTTAGTGACAACTTTTTTGGGATTTCTAATGGCTTAGATAGACCTAGCAAGACATTCCCAACGGTTCAAGTAAGCATCTCAACAAAAGATGTAATCATCAAAGTTATTTGTGACAAACGAAATGGCATTGTAAGGAAGTTATTGGCCACGCTTGCAATTCATAACCTCTCCGTTGTTTGTAGCAATGTTTTGCCATTTGGGAGTTATGCTCTAAACATCTCCATCATTGCTAAGGTGGATCGTCAATTCATCATGACAATGGACGACTACCTACTGAAAAATCTAAAGGAGGATCTGTTGAAGTGTTGTATTTTGCAACAATAA 846 0.3712 MDESWEKWFSDLEMDDGCDIFNEHDIVSAEEELKHNIGNASCLEENTGNTSSEKPMFAFHNLSFEDTIEVPNITSKSKRIEPENGKCNKRVRNSSETNDHVIAERKRRENLTRLFIALSAIIPGLKKMDKLSILNNTIDRVKYLQNRIKVLEEENQKRRMESMTTLANKKPNVNVSDNFFGISNGLDRPSKTFPTVQVSISTKDVIIKVICDKRNGIVRKLLATLAIHNLSVVCSNVLPFGSYALNISIIAKVDRQFIMTMDDYLLKNLKEDLLKCCILQQ 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01492 281 PANTHER BHLH TRANSCRIPTION FACTOR 19 278 - -
Cca01g01492 281 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 95 144 IPR011598 GO:0046983
Cca01g01492 281 Gene3D - 86 168 IPR036638 GO:0046983
Cca01g01492 281 Coils Coil 134 161 - -
Cca01g01492 281 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 99 163 IPR036638 GO:0046983
Cca01g01492 281 SMART finulus 101 150 IPR011598 GO:0046983
Cca01g01492 281 Pfam Helix-loop-helix DNA-binding domain 100 145 IPR011598 GO:0046983
Cca01g01492 281 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 19 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01492 Cca-Chr1 31916522 31923087 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01492 84 273 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 41.237 7.69e-40 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca01g01492 HLH 1.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01492 - - ccaj:109790958 560.836