Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01489 ATGAAGTGCTTTTACTATTTCAAAGACAAATATAGGAACAAGAAGCAAAGGTCAGCACCTGAACTGAAAGAGCAAGAGAAACTCGAGTTTTCAGGGGCTGAAAGGGTCACCAAGTCCTCATGCTCATCTGCATCGCCTCGCGGTATACCGGATCTGTACGTGGAGAAGGGTCACAATTTGAGGGTGTTCTCCTTCACAGAGCTCAAGCGTGCGACAAGTGATTTCAGCAGGCTTCTTAAGATAGGAGAAGGTGGATTTGGAACTGTGTTTAAAGGTTCAATCAAGCCTGTTGATGGGAGTGGGAATTCTGTTTTAGTTGCCATCAAAAGGCTTAACAAGGATGGATTACAGGGTCATAAGCAATGGTTGACCGAAGTTCAGTTTCTTGGTGTTGTGGAACACCCAAATCTTGTCAAGCTTATTGGATACTGTGCTCTGGATGATGAAAGAGGGATCCAGAGACTACTTGTGTATGAATACATGCCAAACAGAAGCTTAGAGTATCACCTTTTCAATAAAGCATGTGATCCTCTTCCTTGGAAAACAAGACTTGAAATAGCACTTGGAGCAGCTCAAGGGTTAACTTATCTGCACGAAGAATTAGAAATTCAGGTGATATATCGAGATTTTAAAGCTTCAAACGTATTACTGGATGAAAACTTCAAGCCAAAGCTTTCTGATTTTGGACTTGCTAGGGAGGGACCAGTAGCTGGTGATACTCATGTTTCAACAGCTGTAATGGGAACATATGGCTATGCTGCTCCTGATTACATTGAGACAGGACATCTCACTGCCAAGAGTGATGTGTGGAGTTTTGGCGTGGTGTTATATGAAATACTCACTGGTAGGCGTTCAATGGAAAGAAACAGACCCAAAACAGAGAAAAAACTATTGGAGTGGGTTAAGCAATACCCTTCTGACAGCAAAAGGTTTGACACTATAATCGATCCACGACTACTTGAAGGACAATATTCCATTGGAGGAATGCGAAAACTTGCCAAACTTGCGGATCATTGCCTGCGTAAGAGTGCAAAAGATAGGCCAACAATGAGTCAGGTGGTAGAGAGATTGAAGCAGATAATCCAAGACTCTGATGAAGAACAACACCCTGCAGATGATAAAGATATTGAGGTGTCTGAAAATGATCCGGTTGAGCCTGAAGAAAAATCAAATGATTCAGGCTCTTCAGAGTTATGGAAAAAGAGGATGGAACATCTTGCTAAACTTGGTGAAAGTGTGGAGAGTGCTAGTAGAAGAAGATTTATGATCTTGCAGAGAGCCAATGTCTCTTCATAG 1296 0.4213 MKCFYYFKDKYRNKKQRSAPELKEQEKLEFSGAERVTKSSCSSASPRGIPDLYVEKGHNLRVFSFTELKRATSDFSRLLKIGEGGFGTVFKGSIKPVDGSGNSVLVAIKRLNKDGLQGHKQWLTEVQFLGVVEHPNLVKLIGYCALDDERGIQRLLVYEYMPNRSLEYHLFNKACDPLPWKTRLEIALGAAQGLTYLHEELEIQVIYRDFKASNVLLDENFKPKLSDFGLAREGPVAGDTHVSTAVMGTYGYAAPDYIETGHLTAKSDVWSFGVVLYEILTGRRSMERNRPKTEKKLLEWVKQYPSDSKRFDTIIDPRLLEGQYSIGGMRKLAKLADHCLRKSAKDRPTMSQVVERLKQIIQDSDEEQHPADDKDIEVSENDPVEPEEKSNDSGSSELWKKRMEHLAKLGESVESASRRRFMILQRANVSS 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01489 431 PANTHER OS07G0495150 PROTEIN 25 419 - -
Cca01g01489 431 PANTHER OS01G0588500 PROTEIN-RELATED 25 419 - -
Cca01g01489 431 ProSitePatterns Protein kinases ATP-binding region signature. 81 109 IPR017441 GO:0005524
Cca01g01489 431 MobiDBLite consensus disorder prediction 361 399 - -
Cca01g01489 431 ProSiteProfiles Protein kinase domain profile. 75 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g01489 431 Gene3D Phosphorylase Kinase; domain 1 51 160 - -
Cca01g01489 431 CDD STKc_IRAK 81 360 - -
Cca01g01489 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Cca01g01489 431 Gene3D Transferase(Phosphotransferase) domain 1 161 384 - -
Cca01g01489 431 Pfam Protein tyrosine and serine/threonine kinase 80 357 IPR001245 GO:0004672|GO:0006468
Cca01g01489 431 SUPERFAMILY Protein kinase-like (PK-like) 58 357 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01489 Cca-Chr1 31770636 31779057 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01489 61 399 Glycoside Hydrolase AT3G07070 45.429 2.50e-94 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Cca01g01489 PK_Tyr_Ser-Thr 6.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01489 - - gmx:100784625 780.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01489 01 31770636 31779057 Cca01g01489 01 31770636 31779057 ECH