LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca01g01488	ATGCTCCGCCGTGCAGCCGCGTCCCTCCTCTCCGGCGCCTCCCGCCGCCGCTTCTCGACCGACGTGGCGGCCGCCCCCGCGGAGGCGGAATCGAGGTTCGTGGAGGCCTGGAAGAAGGCGAGCCCCAACCTGGAGCCGCCCAAGACCCCGTCCGCCTTCATGAAGCCCCGACCACCCACTCCCTCCGCTCTCCCCTCCAAACTCACCGTCAACTTCGTCCTCCCCTACGCTTCCCAATTGGCCGCTAAAGAGGTTGATATGGTCATTGTACCAGCAACAACTGGTCAGATGGGTGTTCTCCCAGGACACGTAGCAACAATTGCAGAGTTGAAACCTGGTGTCCTATCTGTACATGAAGGGAGCGATGTGACCAAGTACTTTGTCAGCAGTGGCTTTGCATTCATCCATGCAAACTCGGTCGCTGATATAGTAGCTGTTGAGGCTGTGCCAGTAGATCGAATTGATGCAAATCTTGTGCAGAAGGGTCTTCAAGATTTCACCCAGAAGCTGAACTCAGCCACAACTGATTTGGAGAAAGCTGAAGCTCAGATTGGGATCGATGTCCATAGCGCTCTCAACTCTGCTCTTTCAGGCTGA	597	0.5645	MLRRAAASLLSGASRRRFSTDVAAAPAEAESRFVEAWKKASPNLEPPKTPSAFMKPRPPTPSALPSKLTVNFVLPYASQLAAKEVDMVIVPATTGQMGVLPGHVATIAELKPGVLSVHEGSDVTKYFVSSGFAFIHANSVADIVAVEAVPVDRIDANLVQKGLQDFTQKLNSATTDLEKAEAQIGIDVHSALNSALSG	198

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca01g01488	198	Pfam	ATP synthase, Delta/Epsilon chain, beta-sandwich domain	68	140	IPR020546	GO:0015986
	Cca01g01488	198	Gene3D	-	58	154	IPR036771	-
	Cca01g01488	198	PANTHER	ATP SYNTHASE DELTA/EPSILON CHAIN	8	198	IPR001469	GO:0015986\|GO:0045261\|GO:0046933
	Cca01g01488	198	TIGRFAM	ATP_synt_epsi: ATP synthase F1, epsilon subunit	79	186	IPR001469	GO:0015986\|GO:0045261\|GO:0046933
	Cca01g01488	198	Hamap	ATP synthase epsilon chain [atpC].	66	186	IPR001469	GO:0015986\|GO:0045261\|GO:0046933
	Cca01g01488	198	PANTHER	ATP SYNTHASE SUBUNIT DELTA', MITOCHONDRIAL	8	198	-	-
	Cca01g01488	198	CDD	F1-ATPase_delta	68	191	IPR001469	GO:0015986\|GO:0045261\|GO:0046933
	Cca01g01488	198	Gene3D	-	155	197	-	-
	Cca01g01488	198	Coils	Coil	163	183	-	-
	Cca01g01488	198	MobiDBLite	consensus disorder prediction	40	60	-	-
	Cca01g01488	198	SUPERFAMILY	Epsilon subunit of F1F0-ATP synthase N-terminal domain	68	149	IPR036771	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca01g01488	3	198	Primary Pumps ATPases	AT5G47030	70.918	4.19e-103	294

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca01g01488	K02134		-	gmx:100780778	342.428

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca01g01488	01	31713383	31717251	Cca01g01488	01	31713383	31717251	ECH