Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01484 ATGCAGACAGAGAAGGCCTATATACTTGGAGAAGCAATGATTTACATGAAACAACTTCAAGAGAGAGTAAAAGAGCTAGAGAATGATCAGAACAAGAGGAGAACATCAGATTCCAGAATATTCATCAAGAAATCACAAATCTGCCCAAAAGAGGAAGCCATGCCACGTGAGACCATTAACTCTTATGGTGGCTATAGAACCACAGCACCCCTACCTCAGGTTGAAGCTATGGTGTTGGAAAAGGAAGTTCTCATTGGAATCCACTGCCACAAACAAAAGGATATTGTGCTCAAAATTATGGCCTTGCTTCAAAATCTCCACCTCTCTCTTGCGAGTAGTAGTGTATTGCCATTTGGGACTTCCACTCTAAAAGTCACAGTCATTGCCCAGAGAGTGAGTGCAAGACCCGAGTCCAAGCGTTTCGCATTTCACGAGGAGCGTTTTGAGGGCCATGGTTTGTGTTTGAGGCCAAATTGTGGGTGGTTTGAGTTAGAGCACCATGTGTTTGAGAAAATGTACATGAGAAAAGTGGAGATGAGAAATAATTGA 549 0.4281 MQTEKAYILGEAMIYMKQLQERVKELENDQNKRRTSDSRIFIKKSQICPKEEAMPRETINSYGGYRTTAPLPQVEAMVLEKEVLIGIHCHKQKDIVLKIMALLQNLHLSLASSSVLPFGTSTLKVTVIAQRVSARPESKRFAFHEERFEGHGLCLRPNCGWFELEHHVFEKMYMRKVEMRNN 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01484 182 PANTHER BHLH TRANSCRIPTION FACTOR 2 130 - -
Cca01g01484 182 Coils Coil 9 36 - -
Cca01g01484 182 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 2 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01484 Cca-Chr1 31575762 31580448 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01484 2 132 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22760 35.115 3.64e-20 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01484 - - ccaj:109819161 254.603