Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01474 ATGGCACACAACTCAGAGGACGTGCCACCTTCACGACACCATGAACGAGACAAAGCCAACCAAAAAGTTCCCTTCTACACGCTCTTCACTTTCGCGGATCGTCGTGACGTGGCATTCATGGCCATTGGCACGATCTGCGCTATGGCTAATGGGTGGTCGCAGCCTATCATGACTCTCATTCTAGGGAAGCTCATCAACACTTTTGGCTCCGCCGATCCATCAAATACCATCAAGGAAGTTTCCAAGGTGTCCTTGTTGTTTGTTTACCTGGCTATTGGGACTGGAATTGCTTCATTCCTTCAGGTAGCATGTTGGATGATGACAGGTGAAAGACAAGCCGCAAGGATCCGTGGCTTGTACTTGAAAACTATATTGAAGCAGGACATTGCTTTCTTTGACACTGAAACTACTACTGGTGAGGTGATTGGGAGAATGTCTGGTGACACCATTCTCATTCAAGATGCCATGGGAGAAAAGGTTGGAAAGTTTATGCAACTTGCTTCAACATTTTTTGGTGGCTTTTTGATTGCCTTTGTCAGAGGATGGCGTCTTGCTGTTGTTTTGCTTGCATGTATACCATGTGTTATTGTTACTGGCGGAGTATTGTCCATGTTGATGGCTAAAATGTCAAGTCGTGGGCAAGCTGCATATGCAGAAGCTGGAAATGTTGTTGAACAAACAGTTGGAGCTATTAGAACTGTGGCATCTTTCACTGGCGAGAAAAAAGCAATAGAAAAGTATAATATCAAGTTAAAGGATGCTTACAAAACAATGGTTCAACAAGGGATTGCCTCGGGGTTAGGAATGGGATCACTTTTATTGATTGTCTTCTGCACCTATGCACTTGCCATGTGGTATGGTTCTAAACTGGTCGTTGAGAGAGGATACAATGGTGGAACCGTCATCACTGTAATAGTAGCTCTTATGACTGGTGGAATGTCACTTGGTCAAACATCCCCATGCCTAAATGCATTTGCGGCAGGCCAAGCAGCAGCATATAAGATGTTTGAGACAATTAAAAGAAAGCCAAAAATTGATTCTTATGACACCAGTGGTCTTATCTTGGAAGACATAGAGGGATACATTGAACTCAAGGATGTTTACTTTAGGTACCCTGCAAGGCCAGATGTGCAGATCTTCTCTGGATTCTCATTGTGTGTTCCCAGTGGTGCAACTGCTGCTTTGGTGGGTCAAAGTGGAAGTGGGAAGTCTACAGTAATAAGTTTATTAGAAAGATTCTATGATCCTGATGCTGGAGAAGTACTCATAGATGGTGTGAATTTGAAGAGTTTTCAAGTTAGATGGATAAGGGAACAAATTGGGCTGGTTAGTCAAGAACCTATCCTGTTTGCAGCTAGTATCAAAGAGAACATAGCCTATGGAAAAGAAGGTGCAACGGATGAGGAAATAACATCAGCAATAACACTTTCTAATGCCAAAAATTTCATTGACAAGCTGCCTCAGGGCCTTGAAACAATGGCAGGCCAGAATGGGACTCAACTTTCTGGTGGGCAAAAGCAAAGAATTGCAATTGCAAGGGCAATTTTGAAGAACCCAAGAATTCTTCTTCTTGATGAAGCAACAAGTGCATTGGATGCTGAGTCTGAACGTGTTGTTCAGGCAGCATTAGAACAAGTTATGACAAAAAGGACAACTGTAATTGTTGCACATCGCTTGACAACTATTAGAAATGCTGACACCATAGCAGTGGTTCATCAAGGCAAAATTGTAGAGGAAGGAACTCATGATGAGTTAATCAAGGATGTTGATGGCGCTTATTCTCAACTTATTCGTCTGCAAGAAGGAGCTAAGGAAGCTGAATGTAGCCTTAATTCTGAAGCAGAGAAGTCAAGTAGCAGTTTTAACTTAGATAGTGACATGCCTAGATCTCCCACTCAGAAAGCATCCTTTGTGAGATCATTAAGCAGAGTTTCATCTAGTGGTCGTAGACACTCTCAGTCAGATAGCTTTGCTCTTTCTCATCAAAGTGGAGTACATGGATACCAAGAAACAGCTGATGGGGATGTTGATACTAGGAAGCCCAAACACATTTCTTTAAAACGTTTGGCCTACTTAAACAAGCCTGAACTTCCTGTCTTGGTGCTTGGATCCATTGCAGCAATAATACAAGGTGTTGTGTTCCCTATGTTTGGCTTATTGTTTTCCTCGGCAATATCTATGTTCTTTGAACCTCCAGAAAAACAGCGGAAAGATTCTAGATTCTGGTCACTTCTATATGTGGGTTTGGGTTTAGTTACTCTAGTGACTATACCAGTGCAAAATTACTTCTTTGGCATTGCTGGTGGAAAATTAATAGAAAGAATTCGTTCACTGACATTTGAAAAGGTCGTGCACCAAGAAATCAGTTGGTTTGATGATCCTGTAAATTCAAGTGGCGCAGTTGGTGCAAGATTATCTACTGATGCTTCAACAGTGAAAAGTCTAGTTGGTGACACATTGGCCCTCATTGTGCAAAATATATCAACAATCACAGCAGGTCTAGTTATATCATTCACAGCTAATTGGATTCTTGCTTTTATAATTCTGGCCGTGTCACCCTTGGTCCTTATGCAAGGAGTCATTCAGATGAAGTTTCTTAAAGGATTCAGTGCAGATGCCAAGGAAAAGTATGAAGAAGCAAGTCAGGTGGCAAATGATGCTGTTGGTAGCATCAGAACCATTGCTTCATTTTGTGCTGAATCAAAGGTGATGGACATGTACAGGAAGAAATGTTTAGAGCCAGAAAAACAAGGTGTTCGGTTGGGGCTTGTTAGTGGTGCAGGATTTGGTTTCTCTTTTTTAGCTCTATACTGCACAAATGCTTTCTGTTTCTACATAGGATCTGTTCTTGTGCAACATGGGAAAGCAACTTTCTCAGAGGTTTTCAAGGTTTTCTTTTGTCTAACAATCACAGCAATAGGAATTTCCCAGACTAGTTCCTTGGCACCAGACACCAACAAAGCTAAAGATTCCACAGCTTCAATATTTGAAATTCTTGACAGTAAACCCACAATTGACTCCAGCAGCAATGAGGGTAGAACACTAGAAGCCGTTACTGGCGTTATTGAGCTTCAACATGTCAGTTTTAATTACCCAACTAGGCCTCACGTTCCAATTTTCAAAGATTTGTGTCTAAGCATTCCAGCTGGAAAGACTGTTGCCTTGGTTGGAGAAAGTGGCAGTGGAAAATCAACAGTGATCAGCCTCTTGGAGAGATTTTACAACCCTGGTTCTGGACACATACTACTAGATGGAGTAAATATTAAAGACTTGAGGCTTAGCTGGTTGAGGCAACAAATGGGGTTGGTTGGACAAGAGCCAATTCTTTTCAATGAAAGCATTCGTGCCAACATAGCTTATGGCAAAGATGGTGGTGCCACAGAGGAAGAGATAGTTGCAGCAGCTCAAGCATCCAATGCACACAATTTCATAAGCTCTCTTCCACGTGGTTATGACACCTCAGTTGGAGAAAGAGGCACACAGTTATCAGGAGGACAAAAGCAGCGTATAGCCATTGCAAGAGCCATGCTGAAAGACCCCAAAATCCTTCTGCTTGATGAGGCAACTAGTGCACTTGATGCAGAGTCAGAGCGCATAGTTCAAGAGGCTCTTGATAGAGTCAGCGTGGACAGAACCACTGTAGTGGTAGCTCATCGTCTTACAACTATTAGAGGTGCTGACATCATATCAGTGATAAAAAATGGGGTGGTTGCTGAAAAGGGAAAACATGATGCGCTGATGAAGATTACTGATGGAGTTTATGCTTCGTTGGTAGCTCTACATACGAGTGCATCGTAA 3798 0.4229 MAHNSEDVPPSRHHERDKANQKVPFYTLFTFADRRDVAFMAIGTICAMANGWSQPIMTLILGKLINTFGSADPSNTIKEVSKVSLLFVYLAIGTGIASFLQVACWMMTGERQAARIRGLYLKTILKQDIAFFDTETTTGEVIGRMSGDTILIQDAMGEKVGKFMQLASTFFGGFLIAFVRGWRLAVVLLACIPCVIVTGGVLSMLMAKMSSRGQAAYAEAGNVVEQTVGAIRTVASFTGEKKAIEKYNIKLKDAYKTMVQQGIASGLGMGSLLLIVFCTYALAMWYGSKLVVERGYNGGTVITVIVALMTGGMSLGQTSPCLNAFAAGQAAAYKMFETIKRKPKIDSYDTSGLILEDIEGYIELKDVYFRYPARPDVQIFSGFSLCVPSGATAALVGQSGSGKSTVISLLERFYDPDAGEVLIDGVNLKSFQVRWIREQIGLVSQEPILFAASIKENIAYGKEGATDEEITSAITLSNAKNFIDKLPQGLETMAGQNGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERVVQAALEQVMTKRTTVIVAHRLTTIRNADTIAVVHQGKIVEEGTHDELIKDVDGAYSQLIRLQEGAKEAECSLNSEAEKSSSSFNLDSDMPRSPTQKASFVRSLSRVSSSGRRHSQSDSFALSHQSGVHGYQETADGDVDTRKPKHISLKRLAYLNKPELPVLVLGSIAAIIQGVVFPMFGLLFSSAISMFFEPPEKQRKDSRFWSLLYVGLGLVTLVTIPVQNYFFGIAGGKLIERIRSLTFEKVVHQEISWFDDPVNSSGAVGARLSTDASTVKSLVGDTLALIVQNISTITAGLVISFTANWILAFIILAVSPLVLMQGVIQMKFLKGFSADAKEKYEEASQVANDAVGSIRTIASFCAESKVMDMYRKKCLEPEKQGVRLGLVSGAGFGFSFLALYCTNAFCFYIGSVLVQHGKATFSEVFKVFFCLTITAIGISQTSSLAPDTNKAKDSTASIFEILDSKPTIDSSSNEGRTLEAVTGVIELQHVSFNYPTRPHVPIFKDLCLSIPAGKTVALVGESGSGKSTVISLLERFYNPGSGHILLDGVNIKDLRLSWLRQQMGLVGQEPILFNESIRANIAYGKDGGATEEEIVAAAQASNAHNFISSLPRGYDTSVGERGTQLSGGQKQRIAIARAMLKDPKILLLDEATSALDAESERIVQEALDRVSVDRTTVVVAHRLTTIRGADIISVIKNGVVAEKGKHDALMKITDGVYASLVALHTSAS 1265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01474 1265 ProSitePatterns ABC transporters family signature. 1162 1176 IPR017871 GO:0005524
Cca01g01474 1265 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1022 1259 IPR003439 GO:0005524
Cca01g01474 1265 SUPERFAMILY ABC transporter transmembrane region 28 346 IPR036640 GO:0005524|GO:0016021
Cca01g01474 1265 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 701 987 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca01g01474 1265 CDD ABC_6TM_Pgp_ABCB1_D1_like 40 323 - -
Cca01g01474 1265 MobiDBLite consensus disorder prediction 614 676 - -
Cca01g01474 1265 CDD ABC_6TM_Pgp_ABCB1_D2_like 690 1005 - -
Cca01g01474 1265 SUPERFAMILY ABC transporter transmembrane region 682 1003 IPR036640 GO:0005524|GO:0016021
Cca01g01474 1265 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 600 IPR027417 -
Cca01g01474 1265 Gene3D - 1012 1264 IPR027417 -
Cca01g01474 1265 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1013 1259 IPR027417 -
Cca01g01474 1265 Pfam ABC transporter transmembrane region 701 972 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca01g01474 1265 Pfam ABC transporter transmembrane region 40 311 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca01g01474 1265 Gene3D - 360 622 IPR027417 -
Cca01g01474 1265 CDD ABC_MTABC3_MDL1_MDL2 362 600 - -
Cca01g01474 1265 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 18 1262 - -
Cca01g01474 1265 Pfam ABC transporter 1041 1190 IPR003439 GO:0005524
Cca01g01474 1265 Pfam ABC transporter 382 529 IPR003439 GO:0005524
Cca01g01474 1265 ProSitePatterns ABC transporters family signature. 501 515 IPR017871 GO:0005524
Cca01g01474 1265 SMART AAA_5 389 575 IPR003593 -
Cca01g01474 1265 SMART AAA_5 1049 1236 IPR003593 -
Cca01g01474 1265 MobiDBLite consensus disorder prediction 614 667 - -
Cca01g01474 1265 CDD ABC_MTABC3_MDL1_MDL2 1022 1258 - -
Cca01g01474 1265 Gene3D ABC transporter type 1, transmembrane domain 86 996 IPR036640 GO:0005524|GO:0016021
Cca01g01474 1265 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 362 598 IPR003439 GO:0005524
Cca01g01474 1265 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 41 327 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca01g01474 1265 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 18 1262 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01474 Cca-Chr1 31079252 31085163 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01474 9 1261 Calmodulin-binding Proteins AT2G36910 44.269 0.0 1046