Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01473 ATGGCTTCTCCGCCACCCTTAACGCTAAACGTCGTCGGATCAGACACCTTCCCAACCGTTTCCAGTTCGTTAACGCCTCCGTCACCGCGCCGTTCCTCTCCGTTACAGAACCTAAGTCCAAGCATTCTCATCATCGTAACGGTGCTCGCCGTCACCGTCATCGTCTCCCTCTCGCTCTGCTTCCTCCTCCGCTACCTCAGCCGCCGCTGCCTCCAGCGCTTCTCCTCCTCCTCCGCCGCGCCATCCGCCGCCGCCACGCCCGTATTCGCCGCCAGCCGCCGCATCTCGCCCGAAGTCCCGCACTCCTCCGCCTCCGTCATCGACTCGCTCCCGCTCTTCACGTTCTCCTCCATCACGCGCCGCTCCTCCGCCGCCGTCGCCGCCGACTGCGCCGTGTGCCTGTCCAAGTTCCACAACCACGACCTCCTCCGCCTCCTCCCTCTCTGCTGCCACGCCTTCCACGCGCAGTGCATCGACACGTGGCTCCAGAACAACCTCACGTGTCCGCTCTGCCGCTCCGCCATCGTCGCCGCCGATTCGGACCTCGCGAAAATCCTCCGCCAGCCGTCCTCCACCGCGGGAAGCAGCGACAGCTTCCGCCTCGAGATAGGCAACATTAGCCGCCGCGGAACCGAAGGCGCCGCCGCCACTCGCGGCAGTTCCCGGTCGCGGTCCTATTCCATTGGATCGTTCGAGTATTTAGTCGACGACGAATCGGAGGTTCCGTTCAGCCACGCTCGGCGGAGGAGCGTGGATGACGCGAAGGAGTTTCCGGCGGCGGCGGAGAGTCAAAACGAAGCAACTCTCGCTGGCGAGGTCGCCGGCGTTAGAAGCTGGCTTAAGGATTACATGGATAGGTTTTCCGCTTCTATTTCGTCGCGAACGGCGTCGTTTCGAAGCTCTGGAAGGTTCTTCAGTGGCGCGGGGAGTAGTCGCCGAAGCGACGTCGTTCCGGTCGCTGCCGAGTATGACTTGGAAGGGAACCGAATCGGCGAAGAGATCAGCGAAATGTTTCGTTGGCTTTCAGGGGTATGA 1035 0.628 MASPPPLTLNVVGSDTFPTVSSSLTPPSPRRSSPLQNLSPSILIIVTVLAVTVIVSLSLCFLLRYLSRRCLQRFSSSSAAPSAAATPVFAASRRISPEVPHSSASVIDSLPLFTFSSITRRSSAAVAADCAVCLSKFHNHDLLRLLPLCCHAFHAQCIDTWLQNNLTCPLCRSAIVAADSDLAKILRQPSSTAGSSDSFRLEIGNISRRGTEGAAATRGSSRSRSYSIGSFEYLVDDESEVPFSHARRRSVDDAKEFPAAAESQNEATLAGEVAGVRSWLKDYMDRFSASISSRTASFRSSGRFFSGAGSSRRSDVVPVAAEYDLEGNRIGEEISEMFRWLSGV 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01473 344 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Cca01g01473 344 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL4 2 313 - -
Cca01g01473 344 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 2 313 - -
Cca01g01473 344 Pfam Ring finger domain 129 172 IPR001841 -
Cca01g01473 344 SUPERFAMILY RING/U-box 106 177 - -
Cca01g01473 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 177 IPR013083 -
Cca01g01473 344 SMART ring_2 130 171 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01473 Cca-Chr1 31063570 31064753 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01473 19 201 C3H Transcription Factor Family AT4G28890 32.979 1.18e-23 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01473 K10663 - gmx:100817751 464.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01473 01 31063570 31064753 Cca01g01473 01 31063570 31064753 ECH