Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01460 ATGTCGCAAGGATTCGCAATCGAACTATACCTAGACCCAGCGCTTGAGAATCAGGTTCTGAAAGCGTGGAATGTTCTCGCGCGGAGACAAATCAGCACACACCTAATCGAAATGGAGTCACGGCCTCACATAACCCTATTCTCCACCCCCTTTCTAGAACCTTCCAAATTGGAACCTCTCCTCAGAGCCTTCGCCTCCAAGCACGACCCTCTCCCTCTCTCCTTCTCATCCCTCGCCACCTTCCCCAACGACGCCGACAACCTCTTCTTCCTCGCCCCCACTCCCACCCTCGCCCTCCTCCACCTTCAGTCACAGCTCTGTGACGCTATCAGAAAAGAAGGCGTCGAAATCGGTGATGACTATGCCTTGGATTCTTGGATTCCGAATTGCCCCGTGGCGCGCCACGTCCCCAAGCAGAGGTTGTCTGAGGCATTCACTCTCTTGAGGGAACTCAAGTTGCCGGTTTCCGGTTACGCTGACGTAAAAACCGACTTAGATATGATCATTCATCTACGACGGCCTTATCTAAGTCGGTTTTAA 540 0.5278 MSQGFAIELYLDPALENQVLKAWNVLARRQISTHLIEMESRPHITLFSTPFLEPSKLEPLLRAFASKHDPLPLSFSSLATFPNDADNLFFLAPTPTLALLHLQSQLCDAIRKEGVEIGDDYALDSWIPNCPVARHVPKQRLSEAFTLLRELKLPVSGYADVKTDLDMIIHLRRPYLSRF 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01460 179 PANTHER - 1 159 - -
Cca01g01460 179 Gene3D Cyclic phosphodiesterase 5 163 - -
Cca01g01460 179 SUPERFAMILY LigT-like 5 146 IPR009097 -
Cca01g01460 179 Pfam 2'-5' RNA ligase superfamily 41 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01460 Cca-Chr1 30549872 30550411 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01460 1 159 Calmodulin-binding Proteins AT5G40190 62.264 5.06e-69 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01460 - - gmx:100802388 274.633