Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01419 ATGCTTAGGGTTTACCACGCTTACACGCAAGAAGCAAGCTCTCAACAGATTGCACGTTCTCTCTCAACTCTTTCGCATACACGTTCTCTCTCAACCCTCTCGCAGGCTCTTCTCTTCACGACAACCCACTTTGACGAACGTTGCTCTTGCGCGAGTTTCAAATTCACAGACGCTCCTAAAGGAGCTCTCCCAAAACGTGTTGGCATTCTTGCGCGAGGTGGCGATTTTTCTAGGGGTAACGGCACAGGTGGAGAAAGTATTTACGGAGGCAAATTTGCAGATGAAAATTTCAAGCTAACACATGATGGACCTGGCTTTCTTTCTATGGCTAATAGTGGTCCTAACACAAATGGATCTCAGTTCTTTATTACATTCAAGCGCCAACCTCATCTTGATGGGTATAAAATCTTCGAATATTTTTTGTACAAGTAG 432 0.4444 MLRVYHAYTQEASSQQIARSLSTLSHTRSLSTLSQALLFTTTHFDERCSCASFKFTDAPKGALPKRVGILARGGDFSRGNGTGGESIYGGKFADENFKLTHDGPGFLSMANSGPNTNGSQFFITFKRQPHLDGYKIFEYFLYK 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01419 143 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 68 143 IPR002130 GO:0000413|GO:0003755
Cca01g01419 143 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 69 137 IPR002130 GO:0000413|GO:0003755
Cca01g01419 143 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 120 132 IPR002130 GO:0000413|GO:0003755
Cca01g01419 143 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 105 120 IPR002130 GO:0000413|GO:0003755
Cca01g01419 143 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP63 68 135 - -
Cca01g01419 143 Gene3D - 53 137 IPR029000 -
Cca01g01419 143 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 68 135 - -
Cca01g01419 143 SUPERFAMILY Cyclophilin-like 69 133 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01419 Cca-Chr1 28987546 28989589 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01419 70 132 U-box Gene Family AT5G67530 57.812 4.13e-16 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01419 K09566 - ghi:107959220 138.272