Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01398 ATGGAGTcggagtcttcttgttctctcttctcaaaatccaaaccccaacggacatacgatgtgttcatcaatttcaggggagaagacacccgtagaaagttcgtttctcatctccatcatggcctctcaacaaatgctggagtcaaaactttctgggacgaggagagtcttgccaagggaacaccgctgggagagctaatgcgagcaatagaagggtctcagatagcactagttgttttctcccaaacttatactcaatcccgttggtgtcttcgtgagcttgaaaaaatcattgaatgccacaaaaattatggtcaaatagttctgcccgtattttaccatgttgacccatccgatgtaagtcatcagaacggtgatttcggagaagcgttGAAAGCAACTGCCCAAAAAACAGTTTCCGAAGATGGAGATGCATTCTTGAGATGGAGCCACGCACTAAACGAAGCTGCAGAATTCTGCGGTTGGGATGTGAGGAATTACAGGAATGAAGCTCAACTAGTGAAGGATATTGTTGAAGATGTTCTTAGTAAACTGGAATATGATGCCCTGTCTATTACCGATTTTCCTGTTGGACTAGAATCTCGTGTGCAACAAGTGATTAGATTTATTGAAAATCAATGTCCCGAAGTTTGTAAGCTAgggatatggggaatgggaggatcgggtaaaactactacagccaaagttatctacaatcgaattcatcatagattcatgcataaaagtttcatggaaggcattagagagttttgtgtaacagataggagagggcaacttcatttacaagaacaacttctttcagatatcctcaaagaaaaggtgatgttacatagtttagggaggggaaaaactgtgatcgataacagacttgctggaaaaacggcactcattgtacttgatgatgtggataagtatgagcagttacaagatctgtgtggaaattgtaaatggttcggtcaaggaactgtaataatcattacaaccagaaatcttcgcctgcttgagcaatttaaagttgattatctttatgagatgcataaaatggacgaagaagagtcccttgagctttttagttggcatgcttttggagaagcaaaaccaagacaggacttcaatgaacttgcaagaaatgcagttgcttattgtggtggtctaccactagctcttgaaattcttggttcttatctgagtgagaggacagaaaaagagtggaaaagtgtgttgtcaaaacgaaaaataattcccgatgctaaagttcagaagatattaaaaataagctataagggtttgtgtgatatgaataaaaacatatttcttgatgtatgttgtgtctttattggtgaagacagagactatgtcatcgagatactaaatggctgtgatcgtaaactgtttgctgatattggaataacagaactcacacagcatagcctcataaaagttgaaaagaacaataaacttggagtgcatcctttgcttcgagacatgggtagagagataattcgtaaaagttcatgttcaagaaaggaacctgggaagcacagtcgattgtggtttcatgaggatgtactcaatgtattgacaaataatactggcaccgaagttattgagggattggctctgaaattgcctttaaccaatacagttttcttcgaagctgttgcttttaaagaaatgaacaagttgagactgttgcgacttgattacgtacaactgggtggggattatgggtatctttctaaggaactgagatggatctactggcaagggtttcctttagaacacatgcctaacaactttaatctggaaggtgtaattgcgattcatttcaagcacagtaatcttagacaagtgtggaaagaaccaaaggttttgtcgcgtctaaagttcctcaatcttagtcattccaagtacttgacagaaacccctgacttttcaaagctaccaaatcttaaaaagctcattctcaaacattgtcgcagtttgtgcaagatacaccaatcccttggagatctctcctttcttgaattgataaatttgaaaggttgttcaagtctaagcaatctcccaagagagacctatcagttgaaatctgtgaaaactctcatcctatctggttgtttgaagattgacaaattggaagaagatatagggaggatggaatccttgacaaCTCTAATTGCTGAAAACACTGCTGTGGAAAAAGTTCCCTTTTCAATAGTGAGCTCAAAAAGCATTGGATATATATTCCTATGTGGATTTAAAGGATCACCACATAATGTTTTTCCTTCTATCATTTGGTCTTGGATATCACCAACAATTAATCCCCTATCTTATATTAGTCCTTTTTGTGGCGTATCATCATCTCTAGTTTCCATGAATATGAAGAAAAATGAATTGGGTGCTCTAACACCAATCCTTAGCAGCATTTTAAATCTTCGAAGTGTTTTGGTGCAATGTGATACGGAGTTACAAACATCTAAACAAGTTGAAACAATTTTGGATGAAGTACGTGGTGTAAATTTGATTAAATCAGAAATAGCACCATATATATCAGAAATATCAGAGCATTCCTTGAGATCATTTTTTATTAGAATTGGAAGTTGCCAAGACGAAGTCTTCAATACTCTCAGTCAGAGCATATCTGAGGAATTGACAACCAGTGAATCTTGCAATGATTTTGTCCCAGGAAACAAGTATCCTTATTGGTTGGCCCATACGGGTAATGAACGTTCGGTGTATTTCACCGTGCCAGATGACTGTAGCATGAACGGAATGACATTGTGTGTTGTTTATTTATCAGCCCCTGAAAACACAGCAACCGATTGTCTTGCTAGTGTCATAATGGTTAATCACACAAAGTGCACCATCCAGATATACAAGCGAGACACAGCAATTTTCTTTAATGAAGTAGATTGGCAGGGCATAATGTCACATTTGGAATCTGGAGACCATGTGGAGTTTTATGTGACTTTTACAAATGGATTGGTGGTCAAAAAGTCAATTGTCTATCTCATGTATGATGAATCAACTGACATGAATGGAAGAGGAATCTGA 3078 0.1423 MESESSCSLFSKSKPQRTYDVFINFRGEDTRRKFVSHLHHGLSTNAGVKTFWDEESLAKGTPLGELMRAIEGSQIALVVFSQTYTQSRWCLRELEKIIECHKNYGQIVLPVFYHVDPSDVSHQNGDFGEALKATAQKTVSEDGDAFLRWSHALNEAAEFCGWDVRNYRNEAQLVKDIVEDVLSKLEYDALSITDFPVGLESRVQQVIRFIENQCPEVCKLGIWGMGGSGKTTTAKVIYNRIHHRFMHKSFMEGIREFCVTDRRGQLHLQEQLLSDILKEKVMLHSLGRGKTVIDNRLAGKTALIVLDDVDKYEQLQDLCGNCKWFGQGTVIIITTRNLRLLEQFKVDYLYEMHKMDEEESLELFSWHAFGEAKPRQDFNELARNAVAYCGGLPLALEILGSYLSERTEKEWKSVLSKRKIIPDAKVQKILKISYKGLCDMNKNIFLDVCCVFIGEDRDYVIEILNGCDRKLFADIGITELTQHSLIKVEKNNKLGVHPLLRDMGREIIRKSSCSRKEPGKHSRLWFHEDVLNVLTNNTGTEVIEGLALKLPLTNTVFFEAVAFKEMNKLRLLRLDYVQLGGDYGYLSKELRWIYWQGFPLEHMPNNFNLEGVIAIHFKHSNLRQVWKEPKVLSRLKFLNLSHSKYLTETPDFSKLPNLKKLILKHCRSLCKIHQSLGDLSFLELINLKGCSSLSNLPRETYQLKSVKTLILSGCLKIDKLEEDIGRMESLTTLIAENTAVEKVPFSIVSSKSIGYIFLCGFKGSPHNVFPSIIWSWISPTINPLSYISPFCGVSSSLVSMNMKKNELGALTPILSSILNLRSVLVQCDTELQTSKQVETILDEVRGVNLIKSEIAPYISEISEHSLRSFFIRIGSCQDEVFNTLSQSISEELTTSESCNDFVPGNKYPYWLAHTGNERSVYFTVPDDCSMNGMTLCVVYLSAPENTATDCLASVIMVNHTKCTIQIYKRDTAIFFNEVDWQGIMSHLESGDHVEFYVTFTNGLVVKKSIVYLMYDESTDMNGRGI 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01398 1025 Gene3D - 354 438 IPR042197 -
Cca01g01398 1025 Gene3D - 192 348 IPR027417 -
Cca01g01398 1025 SUPERFAMILY Toll/Interleukin receptor TIR domain 13 162 IPR035897 -
Cca01g01398 1025 Pfam TIR domain 19 187 IPR000157 GO:0007165
Cca01g01398 1025 Gene3D Ribonuclease Inhibitor 560 896 IPR032675 -
Cca01g01398 1025 ProSiteProfiles TIR domain profile. 17 185 IPR000157 GO:0007165
Cca01g01398 1025 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 22 1012 - -
Cca01g01398 1025 SMART till_3 18 159 IPR000157 GO:0007165
Cca01g01398 1025 Pfam NB-ARC domain 201 418 IPR002182 GO:0043531
Cca01g01398 1025 Gene3D - 13 191 IPR035897 -
Cca01g01398 1025 PRINTS Disease resistance protein signature 219 234 - -
Cca01g01398 1025 PRINTS Disease resistance protein signature 296 310 - -
Cca01g01398 1025 PRINTS Disease resistance protein signature 389 403 - -
Cca01g01398 1025 PRINTS Disease resistance protein signature 653 669 - -
Cca01g01398 1025 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 22 1012 IPR044974 GO:0006952
Cca01g01398 1025 SUPERFAMILY L domain-like 515 822 - -
Cca01g01398 1025 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 447 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01398 Cca-Chr1 28095385 28099416 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01398 10 747 WRKY Transcription Factor Family AT4G12020 28.402 3.02e-74 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01398 - - gmx:100798685 1334.7