Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01397 ATGGAATTCGCGTCTTCTTCACCATCCTTCTCAGAATCCAAACCCAAATGGAAATACGATGTGTTCATCAGTTCTGGGGGTGGAGACATCTGCAGGGCTTTTGTTTCTCATCTCCATTCCGCTCTTTTAGAAGCTAAAGTCAACACTTTTCTTGAGGATGAGAATGAGCATAAGAACGAGGTTATGCGAGCAATAGAAGGGTCTCAGATAGCAATAGTTGTTTTCTCCAAAAGCTATGCTGTACCTACTTGGGGGCAATCTATTTGGTGTCTCGAGGAGCTTGAGAAAATCATTGAATGCCACGAAACTGTTATGCCCATATTTTACGAAATTGACCCATACGATGAACGTCATCAGAAGGGTGATCTTGTGAAAGCGCTCAAAGCAGCTGAACAGGAAATGTTTTCAGGAGAACTCCTGGAAATCAGGTTGTCAAGGTGGAGCCGTTCACTCTCCAAAGTTGCAAATTTCCGTCGTTGGGTTCAGAGCGATTTCACGAATGAAGCTGAACTAGTGCGGGAAGTTGTTGACCACATTCTTACTAAGCTAGACAACGAAGTCTTGCCTATTACCAAATTTCCTGTTGGTTTAGAATCCCGCGTGGAGAAAGTGATTGGATTTATTGAAAAGCAATCCAACAAAGTCTGTATCATAgggatatggggaatgggaggttccggtaaaactaccacagccaaagccatctacaatcaaattcatcgtacattcatggataaaagtttcattgaagatattagagaagtttgtaaaacaaaaggtagagggcatgttcgtttacaagaacgacttctttcagatatccttaaaggaaaggtcaagatacaaagcattgggaagggcacaactatcatcaaggaaagactttgtggaaaaaagttgctcattgtacttgataatgtgaatgagatgagccagttacacctatgtggaaatcgtgaatggtttggtcaaggaactgtaataatcattacaaccagaaatcttcgcctgcttgaccgatttaaagttgattatctttatgagatgcataaaatggatgaaaaagagtcccttgagctttttagttggcatgcttttggagaagcaaaaccaagagaagacttcaacgaatttgcaagaaatatagttgcttattgtggaggactaccactagctcttcaagtccttggttattattcatttggacagacatcaaaggaagtgtgggaaagtctttcatcaaatccaaaaataacaccctttgatcaaattctggagaaattaagaataagttttgatgatttacaagatcagatggaaaaggatatatttcttgatatatgttgtttctttattggtgtagacagagcctatgttactaatatactaaatggctgtggtttatatgctgatattggaataacagttctcatagagtgtagcctcataaaacttgaaaagaacaacaaactgggaatgcatcctttgcttcaagaaatgggaagagaaataatttgtgaaagttcaagaacggaacttgggaagcgcagtcggttgtggtttgaaggggatgtactctatgtattggaaaagaatactgggaccaaagctattgagggattggctctgaaattgcatttatccaacagatatttcttcatcaaagctgatgcttttaagaaaatgaagaatttgagactgttacaacttgataatgtacaactcactggagattatgggtgtctttctaagcaactgagatggatcaggtggaaaggatttcctcgaagatacatacctaacaacttttatctggaaggtgcaattgcgattgatttaaaacacagtaatcttagactagtctggaaagatccccaggatttagggtggctaaaaatcctcaatcttagtcattccaagtacttgaaagaaacccctgagttttcaaaactaccaaatcttgaaaagctcattctcaaagattgccctagtttgtgcaaggtacacaagtccattggagatctccgcaatcttattctattaaatttgaaggactgtaaaagtcttgccaatcttccaaggagagtttacaagttgaaatctgtgaaaagtctcatcctttcgggttcttcgaagattgacaaattggaagaagacatagtgcagatggaatccttgacaactctatttgctaaaaatactgctgtgacacgagttcccttttcaatagtaagatcaaaaagcattgattatgtatccctaTGTGGATATGAAGGATTATCACATAATGTTTTTCCTTCTATCATTTGGTCTTGGATGTCACCAAAAATGAATCCCCTAACTCGTATTCATTCATTTAGTGTCACTTCATCATATCTAGTTTACATGGATTTGCAGAACAATATTTTGGGTGATCTAGCATCAGCGGTTAGAAATCTTTCAAATCTTCGTAGTCTTTCGGTGCAAGACACAGAATTTCAACTATCTAAACTATTAAGAACAATTCCGGATGATGCATATGGTGTAAATTTTACTGAATTTGAAATAAGATCAGATACATCACAAATTTCAAATCAATACCAGGGGTCTTATTTGATTGGAATTGGATGTTACCGTGCAGTCTTCAATACTCTCATTGATAGCATATCTAAGGGATTGACAACCAACGAGTCTTGTGATATTTTTCTCCCTGGTGACAATTATCCTTACTGGTTGGCTCATACGGGTGAGGGACATTCAGTGTATTTTACTGTGCCCAAGGATTGTCGCATAAAGGGAATGACTTTGTGTGTTGTTTATTTATCAACCCGCGAAAACATGGCAACTAAATGTCTAGTTAGTGTTTCAATGGTTAATTACACAAAGTGCACCATGCAGATACACAAGCAAGACACAGTAATTTCATTTGATTGGCAGGGCATAATATCACATTTGGGACCTGGAGACAAGGTAAAAATTTTTGTGACTCTTGGGAATGGATTGGCAATCAAGAAGACAGCTGTCTATCTAATGTGTGATGAATCAATTGGCATGGAAATAAAGCCTTCTCCCAAGACAAAAATGGAAATGAAGCCTTCTCCCAAGACAAAAATGGAAATAAAGCCTTCTCCCAAGACAAAAATTCCTTCGAACCAAAAGGATAAAAAGCCTTCTCCCGAGACAAAAATTGCTAGGAACCAAAAGGGCCTATCAAGTGTTTTTGCTAGGCGGTAG 3213 0.1983 MEFASSSPSFSESKPKWKYDVFISSGGGDICRAFVSHLHSALLEAKVNTFLEDENEHKNEVMRAIEGSQIAIVVFSKSYAVPTWGQSIWCLEELEKIIECHETVMPIFYEIDPYDERHQKGDLVKALKAAEQEMFSGELLEIRLSRWSRSLSKVANFRRWVQSDFTNEAELVREVVDHILTKLDNEVLPITKFPVGLESRVEKVIGFIEKQSNKVCIIGIWGMGGSGKTTTAKAIYNQIHRTFMDKSFIEDIREVCKTKGRGHVRLQERLLSDILKGKVKIQSIGKGTTIIKERLCGKKLLIVLDNVNEMSQLHLCGNREWFGQGTVIIITTRNLRLLDRFKVDYLYEMHKMDEKESLELFSWHAFGEAKPREDFNEFARNIVAYCGGLPLALQVLGYYSFGQTSKEVWESLSSNPKITPFDQILEKLRISFDDLQDQMEKDIFLDICCFFIGVDRAYVTNILNGCGLYADIGITVLIECSLIKLEKNNKLGMHPLLQEMGREIICESSRTELGKRSRLWFEGDVLYVLEKNTGTKAIEGLALKLHLSNRYFFIKADAFKKMKNLRLLQLDNVQLTGDYGCLSKQLRWIRWKGFPRRYIPNNFYLEGAIAIDLKHSNLRLVWKDPQDLGWLKILNLSHSKYLKETPEFSKLPNLEKLILKDCPSLCKVHKSIGDLRNLILLNLKDCKSLANLPRRVYKLKSVKSLILSGSSKIDKLEEDIVQMESLTTLFAKNTAVTRVPFSIVRSKSIDYVSLCGYEGLSHNVFPSIIWSWMSPKMNPLTRIHSFSVTSSYLVYMDLQNNILGDLASAVRNLSNLRSLSVQDTEFQLSKLLRTIPDDAYGVNFTEFEIRSDTSQISNQYQGSYLIGIGCYRAVFNTLIDSISKGLTTNESCDIFLPGDNYPYWLAHTGEGHSVYFTVPKDCRIKGMTLCVVYLSTRENMATKCLVSVSMVNYTKCTMQIHKQDTVISFDWQGIISHLGPGDKVKIFVTLGNGLAIKKTAVYLMCDESIGMEIKPSPKTKMEMKPSPKTKMEIKPSPKTKIPSNQKDKKPSPETKIARNQKGLSSVFARR 1070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01397 1070 MobiDBLite consensus disorder prediction 1017 1055 - -
Cca01g01397 1070 SUPERFAMILY "Winged helix" DNA-binding domain 423 529 IPR036390 -
Cca01g01397 1070 ProSiteProfiles TIR domain profile. 17 183 IPR000157 GO:0007165
Cca01g01397 1070 MobiDBLite consensus disorder prediction 1014 1070 - -
Cca01g01397 1070 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 447 IPR027417 -
Cca01g01397 1070 SUPERFAMILY L domain-like 559 824 - -
Cca01g01397 1070 Pfam TIR domain 18 187 IPR000157 GO:0007165
Cca01g01397 1070 Pfam NB-ARC domain 198 414 IPR002182 GO:0043531
Cca01g01397 1070 Gene3D - 186 345 IPR027417 -
Cca01g01397 1070 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 22 1005 IPR044974 GO:0006952
Cca01g01397 1070 PRINTS Disease resistance protein signature 217 232 - -
Cca01g01397 1070 PRINTS Disease resistance protein signature 294 308 - -
Cca01g01397 1070 PRINTS Disease resistance protein signature 386 400 - -
Cca01g01397 1070 PRINTS Disease resistance protein signature 673 689 - -
Cca01g01397 1070 Gene3D - 351 436 IPR042197 -
Cca01g01397 1070 Gene3D - 13 185 IPR035897 -
Cca01g01397 1070 CDD AAA 195 341 - -
Cca01g01397 1070 Gene3D Ribonuclease Inhibitor 539 853 IPR032675 -
Cca01g01397 1070 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 22 1005 - -
Cca01g01397 1070 SUPERFAMILY Toll/Interleukin receptor TIR domain 15 161 IPR035897 -
Cca01g01397 1070 SMART till_3 18 157 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01397 Cca-Chr1 28052751 28057815 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01397 8 743 WRKY Transcription Factor Family AT4G12020 30.588 4.13e-76 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01397 - - gmx:100806743 1367.06