Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01395 ATGGTTTTGCATAGCTGGATTTTCAGTTCTCATATTCTTGTTAGTTTCTGGTTGCTTATTAGTTGTGGCATGACCTATGGGACTGAGACTGATATCTTCTGCTTGAAAAGTATCAAAAATTCCCTTGAAGACCCCGAAAATTATTTGAAGTTTTCTTGGGATTTCAACAACAACACCGAAGGGTTCATATGTAGGTTTAATGGGGTTGAGTGTTGGCACCCTGATGAGAACAGGGTCTTGAATCTCAAACTGTCGAATATGGGACTCAAGGGCCAGTTTCCTCGTGGCATTCAAAATTGTTCGAGCTTAACTGGACTTGACCTTTCGATTAACAAACTTTCTGGAACCATTCCAGGAGATATATCTACTCTTATACCATTTGCAACAACTCTTGATCTATCTACAAATGAATTTTCTGGGGTGATACCTGTGACTCTTGCAAATATTACCTTTGTTAATACCATTAAACTTGATCAGAACAGACTCACTGGGCAAATTCCTCTACAACTTGGTCTTCTCGCACGAATTAAGGCGTTTTCTGTATCCAACAATCTTTTGACAGGGCCTATTCCAACCTTTGGCAATGGCGTTTCAGTAAATTATGCTAATAATCCAGGCCTGTGTGGACCTTCATTAGGACCTTGTCAAACCAAGTCTTCCAAGAGTAACATGGCTGTTATTGCTGGAGCTGCTGTTGGTGGAGTGACTCTTGCAGCTTTAGCATTGGGTATTGGAATGTTCTTCTTTGTGCGACGCGTTTCTTTCAGGAAGAAGGAAGAGGACCCCGAAGGAAACAAATGGGCTAGAAGTCTAAAAGGAGCTAAAGCAATTAAGGTTTCTATGTTTGAGAAATCAATTTCAAAAATGAAATTGAGTGATCTCTTGAAGGCTACTAACAACTTCAGTAATAGCAATAGCATCGGGTCAGGAAGAACGGGAACTGTTTACAGAGCTGTCCTTGATGATGGCATAACACTTATGGTTAAGAGATTACAGGAATCTCAGCACACTGAAAAGGAATTTATGTCTGAGATGGGTACACTAGGGACTGTCAAACATCGCAACCTGGTGCCTCTTTTAGGTTTTTGCATGGCCAAAAAGGAGAGGCTTGTGGTCTATAAAGACATGCCAAATGGAAACCTCCATGATCAACTCCATCCTGTTGAAGCTGTGAGTACCCTTGACTGGACTATGAGGCTCAAAATTGCAATTGGAGCAGCCAAAGGGTTAGCATATCTTCATCATAGCTGCAATCCACGTATTATCCACCGAAACATAAGCTCTAAGTGCATCTTGTTGGATGCAGATTTTGAGCCGAAAATTTCTGATTTCGGTCTTGCTAGACTGATGAACCCAATTGATACTCATCTGAGTACTTTTGTAAATGGGGAGTTTGGTGATTTAGGCTATGTTGCTCCTGAGTACACAAGAACTTTGGTTGCTACACCAAAAGGGGATGTTTACAGCTTTGGGACCGTTCTTCTTGAGTTGGTGACTGGTGAAAGACCAACCAATGTGGCTAAAGCGCCAGAAACTTTCAAAGGAAATCTAGTAGAATGGATTTCGGAGCTCTCAATCAATGCAAAACTCAAGGATGCCATTGATGAATCACTCAGTGACAAGGATGTTGATAGTGAGGTTTTCCAATTTCTGAAGATTGCATGCAACTGTGTCTCACAAACTCCGAAGGAGAGGCCCACCATGTTTGAAGTGTATCAGCTTTTAAGAGCTATTGGGGGTAAATACAACTTCACAACTGAGGATGAGATATTGGTGCCAACGGATATTGGTGAACCTGATATGTTGGATGAACTTATTGTAGCTCGAGAAGTATAA 1836 0.4129 MVLHSWIFSSHILVSFWLLISCGMTYGTETDIFCLKSIKNSLEDPENYLKFSWDFNNNTEGFICRFNGVECWHPDENRVLNLKLSNMGLKGQFPRGIQNCSSLTGLDLSINKLSGTIPGDISTLIPFATTLDLSTNEFSGVIPVTLANITFVNTIKLDQNRLTGQIPLQLGLLARIKAFSVSNNLLTGPIPTFGNGVSVNYANNPGLCGPSLGPCQTKSSKSNMAVIAGAAVGGVTLAALALGIGMFFFVRRVSFRKKEEDPEGNKWARSLKGAKAIKVSMFEKSISKMKLSDLLKATNNFSNSNSIGSGRTGTVYRAVLDDGITLMVKRLQESQHTEKEFMSEMGTLGTVKHRNLVPLLGFCMAKKERLVVYKDMPNGNLHDQLHPVEAVSTLDWTMRLKIAIGAAKGLAYLHHSCNPRIIHRNISSKCILLDADFEPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYTRTLVATPKGDVYSFGTVLLELVTGERPTNVAKAPETFKGNLVEWISELSINAKLKDAIDESLSDKDVDSEVFQFLKIACNCVSQTPKERPTMFEVYQLLRAIGGKYNFTTEDEILVPTDIGEPDMLDELIVAREV 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01395 611 PANTHER LRR RECEPTOR-LIKE KINASE 3 589 - -
Cca01g01395 611 Gene3D Phosphorylase Kinase; domain 1 262 374 - -
Cca01g01395 611 SUPERFAMILY Protein kinase-like (PK-like) 279 575 IPR011009 -
Cca01g01395 611 Pfam Leucine rich repeat N-terminal domain 30 72 IPR013210 -
Cca01g01395 611 PANTHER RECEPTOR-LIKE PROTEIN 55 3 589 - -
Cca01g01395 611 CDD TM_EGFR-like 224 258 - -
Cca01g01395 611 Pfam Protein tyrosine and serine/threonine kinase 304 574 IPR001245 GO:0004672|GO:0006468
Cca01g01395 611 SUPERFAMILY L domain-like 30 196 - -
Cca01g01395 611 Gene3D Ribonuclease Inhibitor 29 216 IPR032675 -
Cca01g01395 611 ProSiteProfiles Protein kinase domain profile. 301 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g01395 611 CDD STKc_IRAK 307 575 - -
Cca01g01395 611 Gene3D Transferase(Phosphotransferase) domain 1 376 591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01395 Cca-Chr1 27865068 27868570 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01395 29 589 Receptor kinase-like Gene Family AT3G28450 46.655 3.00e-175 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Cca01g01395 PK_Tyr_Ser-Thr 4.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01395 - - gmx:100305365 954.51