Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01393 ATGGAACACAACGAACAAAGAACCATAACCACCAAACTCGTGAAATCCAAATTCTTCCCCAAAGTTGTTCGCATTTCGGTCACTGATCACAACGCCACAGACTCCTCCAGCGATGAAGAAAAAGAAGAACACATCCCGAGGATCAAGAAAGTAGTTAACGAGATAAGAATTGTGTGTGTCTCAAGCAATAACAACAGTGGTTGCCAAGAGAATGAAAGTCTCAAACAACAAGAGAAAAATCAGCGAAAATTCCGCGGCGTCCGGCAGCGGGCCTGGGGCCGGTGGGCCGCCGAGATTAGAGACCCGGCCCGACAAAGGCGGGTATGGCTCGGCACTTTCGACACTGCTGAAGAGGCCGCTATGGTGTATGACAGAGCCGCTATTAGTTTAAGAGGTGCTCAAGCTGTTACTAATATAATCAAACCAACAACACCGTGCATAAACCATAATATTACGAATGAGATTAGTTTCTGTGTCAATGGATCGAAAGATACATGTGGCATGTGGACAAAAAAACCTACACATGTGGTACAAGACGAGGATGTGTACGGTCACAATGTTGTTAGTGTCACGAGTTGTGGATACCCTTCACCCACTTCTGTTCTCATGTTTCGGCCTTGGGTGGAACCCTTATTATTGGAAGATACGTCTCAAGGGTTGATAGAAAATGATAATGATGATAATTTCTTGTTCCAAGATCGTGTATTCTACGAAGAACCTCTTCCTATGATGTTTTCTAATGTTGATTGTGTTGATGTTCCGTTGTACGAGGATTTTGAATCGTGTAAATGGGACTTAGATAACTATTTCACTGATCCTTTGTTGCAACCATGA 834 0.4365 MEHNEQRTITTKLVKSKFFPKVVRISVTDHNATDSSSDEEKEEHIPRIKKVVNEIRIVCVSSNNNSGCQENESLKQQEKNQRKFRGVRQRAWGRWAAEIRDPARQRRVWLGTFDTAEEAAMVYDRAAISLRGAQAVTNIIKPTTPCINHNITNEISFCVNGSKDTCGMWTKKPTHVVQDEDVYGHNVVSVTSCGYPSPTSVLMFRPWVEPLLLEDTSQGLIENDNDDNFLFQDRVFYEEPLPMMFSNVDCVDVPLYEDFESCKWDLDNYFTDPLLQP 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01393 277 CDD AP2 83 138 IPR001471 GO:0003700|GO:0006355
Cca01g01393 277 Pfam AP2 domain 83 132 IPR001471 GO:0003700|GO:0006355
Cca01g01393 277 PRINTS Ethylene responsive element binding protein signature 84 95 IPR001471 GO:0003700|GO:0006355
Cca01g01393 277 PRINTS Ethylene responsive element binding protein signature 106 122 IPR001471 GO:0003700|GO:0006355
Cca01g01393 277 PANTHER - 11 71 - -
Cca01g01393 277 PANTHER - 69 272 - -
Cca01g01393 277 SUPERFAMILY DNA-binding domain 83 139 IPR016177 GO:0003677
Cca01g01393 277 SMART rav1_2 83 146 IPR001471 GO:0003700|GO:0006355
Cca01g01393 277 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 69 272 - -
Cca01g01393 277 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 11 71 - -
Cca01g01393 277 ProSiteProfiles AP2/ERF domain profile. 83 140 IPR001471 GO:0003700|GO:0006355
Cca01g01393 277 Gene3D AP2/ERF domain 82 140 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01393 Cca-Chr1 27658350 27659258 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01393 21 139 AP2-EREBP Transcription Factor Family AT4G27950 52.206 1.49e-36 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca01g01393 AP2 3.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01393 - - ccaj:109791382 578.17