Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01388 ATGGGAGGCGAAGGAGGATCTTCGAGGAAGAAGAAGAACAAGAATGCAAAATCTGGGGGTTTTGAATCCCTGGGTCTAAATCCGAATGTGTTCAGGGGAGTGAAGCGGAAGGGGTACAAAGTCCCCACTCCAATCCAGCGCAAGACCATGCCCCTCATCCTTTCCGGGTCCGACGTGGTTGCCATGGCTCGCACGGGCTCCGGCAAAACGGCGGCGTTTCTTCTCCCGATGCTTCACCGCCTGAACCAGCATGTCCCTCAGTCCGGCGTGAGAGCCCTGATTTTATCCCCCACACGAGACTTGGCCCTTCAGACTCTCAAGTTCACCAAAGAGCTTGGCCACTTCACAGACCTTCGCGTTAGTTTGTTAGTCGGCGGAGACAGCATGGAGAGTCAGTTTGAGGAGTTAGCTCAGAGTCCGGATATCATAATCGCCACTCCCGGCAGGCTCATGCACCATTTGTCCGAGGTCGATGACATGTCTTTGCGCAGCGTCGAGTACGTCGTATTCGACGAGGCAGATTGTCTATTTGGCATGGGTTTCGCCGAGCAATTGCATCAGATTCTCGCTCAGCTCGGGGAGAATCGTCAGACCTTGCTTTTCAGTGCCACGTTGCCCAGTGCGCTTGCGGAATTCGCCAAGGCTGGTTTGCGGGACCCTCGCCTCGTGCGCCTCGACCTCGAAACTAAAATCAGCCCTGACTTGAAGCTCGCCTTCTTCACTTTGAGGCAGGAGGAGAAGTACGCGGCTTTGCTGTACTTGATTAGGGAGCATATTGGTTCTGATCAGCAGACGTTGATTTTCGTATCCACCAAACATCATGTCGAGTTTCTCAATGTTTTGTTTCGGCACGAGGGTATTGAGCCGTCTGTATGTTACGGCGACATGGATCAAGATGCTCGCAAAATCCACGTGTCAAGGTTTCGGGCAAGGAAGACTATGTTGTTGATTGTGACGGATGTTGCCGCTCGGGGGATTGACATTCCGTTGCTTGATAATGTTGTCAATTGGGACTTTCCTCCCAAGCCTAAAATATTTGTCCATCGTGTTGGAAGGGCTGCAAGGGCTGGTCGAACTGGTACTGCGTATTCCTTTGTGACTTCTGAGGACATGGCTTACCTTTTGGATCTTCATTTGTTTCTTTCGAAGCCTATCAAACCTGCTCCCACCGAAGAGGAGGTCTTGCTGGATATGGATGGAGTGATGACTAGAAATGACCGGGCAATGGTGAATGGGGATACCATTTATGGTCGTTTCCCACAAAAAGTCATCGACCTTGTTTCTGACAGAGTTAGGGAAATTATTGATGCTTCTGCTGAACTGGAATTATTGCAGAGAACCTGTAAAAATGCTTTTCGGTTGTATTCAAAAACTAAACCCTTACCAGCAAAGGAGTCTATTAGAAGAGTGAAAGATTTGCCTCGAGAAGGGCTGCATCCGATGTTCATGAATGTGTTGGAAAAGGGGGAGCTAACTGCACTTGCATTTTCTGAGCATTTGAAAAAGTTTAGGCCAAAGCAGACCATTTTGGAAGCTGAAGGGGAAGCAGCTAAATCAAAGCATCAACAGGGCCCTTCTGGCCAATGGGTCGATGTGATGAAAAGGAAAAGAGCCATTCATGAAAATATTATAAATTTGGTTCGTGAACAACAGCAGTCCAAGACTAATAAGGAAGAGGAGGAAATTCAATCGGAAATCATTCCTTCCATGGAGAAAGGAAAAAAAGCACGTGATTCTAAGAGAAAGGCACAGTCTTTCAAGGATGAGGATCACTATATAAGTTCAATACCAAATAATCAACATATGGAGGCTGGCCTTCAAGTAAAAGCCAATGAAGACTTTGCTTCAAATAGATTGGAAGCAGCTGTCCTCGATCTAGTAGCAGATGATGGTACTGGCATTAAGAAACAAAGATCTATGTATCACTGGGATAAGAGGAGTAAAAAGTACATCAAGTTAAACAACGGTGATCATGTTGCTGCAAATGGAAAGATAAAGACGGAGAGTGGGGCAAAAACCAAGGCCACCAAGACTGGTATATATAAGAAGTGGAAAGAGCGCTCACACGGTAGGATATTTCTTAGAGGAACAAATAGTGATGGTGATCCTCGGGAATCAACAAGTTTGGCAGGGCCTTACCAAAGAGGGCGTAGGAATTTTAAAGGCAGCAAGAAGCAGCATTCAATGCCCAATGCTCACGTGCGTTCAGAAATTAAAGATATGGATCAAATTCGAAAGGAGAGACAGACAAAGGCCAACAGAATTTCTTTTGTAAAGAGCAAGTCGACAAAGGGTAAAAAGTTTGGTagaaatggaaaaaaaagaaaaggaaaataa 2337 0.4613 MGGEGGSSRKKKNKNAKSGGFESLGLNPNVFRGVKRKGYKVPTPIQRKTMPLILSGSDVVAMARTGSGKTAAFLLPMLHRLNQHVPQSGVRALILSPTRDLALQTLKFTKELGHFTDLRVSLLVGGDSMESQFEELAQSPDIIIATPGRLMHHLSEVDDMSLRSVEYVVFDEADCLFGMGFAEQLHQILAQLGENRQTLLFSATLPSALAEFAKAGLRDPRLVRLDLETKISPDLKLAFFTLRQEEKYAALLYLIREHIGSDQQTLIFVSTKHHVEFLNVLFRHEGIEPSVCYGDMDQDARKIHVSRFRARKTMLLIVTDVAARGIDIPLLDNVVNWDFPPKPKIFVHRVGRAARAGRTGTAYSFVTSEDMAYLLDLHLFLSKPIKPAPTEEEVLLDMDGVMTRNDRAMVNGDTIYGRFPQKVIDLVSDRVREIIDASAELELLQRTCKNAFRLYSKTKPLPAKESIRRVKDLPREGLHPMFMNVLEKGELTALAFSEHLKKFRPKQTILEAEGEAAKSKHQQGPSGQWVDVMKRKRAIHENIINLVREQQQSKTNKEEEEIQSEIIPSMEKGKKARDSKRKAQSFKDEDHYISSIPNNQHMEAGLQVKANEDFASNRLEAAVLDLVADDGTGIKKQRSMYHWDKRSKKYIKLNNGDHVAANGKIKTESGAKTKATKTGIYKKWKERSHGRIFLRGTNSDGDPRESTSLAGPYQRGRRNFKGSKKQHSMPNAHVRSEIKDMDQIRKERQTKANRISFVKSKSTKGKKFGRNGKKRKGK 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01388 778 Pfam Helicase conserved C-terminal domain 247 357 IPR001650 -
Cca01g01388 778 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 375 IPR027417 -
Cca01g01388 778 CDD SF2_C_DEAD 245 366 - -
Cca01g01388 778 Pfam DEAD/DEAH box helicase 43 210 IPR011545 GO:0003676|GO:0005524
Cca01g01388 778 Gene3D - 225 395 IPR027417 -
Cca01g01388 778 SMART ultradead3 38 245 IPR014001 -
Cca01g01388 778 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 29 8 775 - -
Cca01g01388 778 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 247 396 IPR001650 -
Cca01g01388 778 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 8 775 - -
Cca01g01388 778 Gene3D - 4 224 IPR027417 -
Cca01g01388 778 SMART DBP10CT_2 625 687 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Cca01g01388 778 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 19 47 IPR014014 GO:0003724
Cca01g01388 778 MobiDBLite consensus disorder prediction 730 754 - -
Cca01g01388 778 Pfam DBP10CT (NUC160) domain 625 686 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Cca01g01388 778 MobiDBLite consensus disorder prediction 1 21 - -
Cca01g01388 778 MobiDBLite consensus disorder prediction 760 778 - -
Cca01g01388 778 MobiDBLite consensus disorder prediction 692 778 - -
Cca01g01388 778 MobiDBLite consensus disorder prediction 1 17 - -
Cca01g01388 778 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 50 223 IPR014001 -
Cca01g01388 778 CDD DEADc_DDX54 19 224 - -
Cca01g01388 778 SMART helicmild6 276 357 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01388 Cca-Chr1 27384279 27391029 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01388 3 396 Eukaryotic Initiation Factors Gene Family AT1G72730 31.566 4.75e-60 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01388 K14808 - gmx:100806274 1385.93