Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01356 ATGAAGCAGGGAGTGCTAACACCTGGTCGTGTTCGTCTGTTGCTCCACAGAGGAACACCTTGCTTTCGTGGATATGGAAGGCGCAATGGGGAGCGTAGGAGGAAGTCTGTCCGTGGGTGCATTGTTAGCCCAGACCTCTCTGTTCTGAACTTGGTAATCGTTAAGAAGGGTGAAAATGATTTACCAGGGTTGACTGATGTTGAAAAGCCAAGAATGAGGGGTCCAAAGAGAGCATCCAAAATTCGTAAGCTGTTCAACCTGTCTAAGGAAGATGATGTGAGGAAGTATGTCAACACATACCGTCGAACCTTCACAACAAAAGCTGGGAAAAAGGTGAGCAAAGCTCCTAAGATTCAACGACTGGTCACTCCATTGACACTGCAAAGAAAGCGGGCAAGGATTGCTGATAAGAAGAAGAGAATCGCAAAGGCAAAATCCGAGGCAGCTGAGTATCAGAAACTTCTTGCCTCCAGGTTGAAGGAGCAGAGGGAGCGCCGCAGTGAGAGTTTGGCCAAGAGGAGATCCAAGCTTTCCAGCGTTTCTAAACAAGCTGCCACTGTGTAG 564 0.4823 MKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKAGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRERRSESLAKRRSKLSSVSKQAATV 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01356 187 Coils Coil 127 154 - -
Cca01g01356 187 MobiDBLite consensus disorder prediction 157 187 - -
Cca01g01356 187 MobiDBLite consensus disorder prediction 157 175 - -
Cca01g01356 187 PANTHER 40S RIBOSOMAL PROTEIN S6 1 184 - -
Cca01g01356 187 PANTHER 40S RIBOSOMAL PROTEIN S6 1 184 IPR001377 GO:0003735|GO:0005840|GO:0006412
Cca01g01356 187 Gene3D - 71 172 - -
Cca01g01356 187 Pfam Ribosomal protein S6e 1 66 IPR001377 GO:0003735|GO:0005840|GO:0006412
Cca01g01356 187 SMART Ribosomal_S6e_2 1 66 IPR001377 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01356 Cca-Chr1 26129614 26132581 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01356 1 181 Cytoplasmic Ribosomal Protein Gene Family AT4G31700 90.055 2.93e-108 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01356 K02991 - gmx:100801194 315.464