Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01354 ATGCCCTTGAGACTAACTTGTGTCGCTTCAGTTATGAGGAGCTTGAAAGAGCTACCAATGAAAGATTATTGGTTTGAGTACATGAGCAATGGCACTTTGGCAAGTCTTTTTTTCAATGAGGTGAAACTTGATTGGAAACTAAGGTTAGAAATTGCATTTGGGGTTGCTAGAGGACTTGCATATTTGCATGAAGAGTGCATCACCCTGATTATCCATTGTGACATAAAGCCTCAAGACATACTCCTTGATGTGTACTATAATGCAAGAATTTCTGACTTTGGATTGGCCAAGCTTTTGAAGATGAACCAAAGTAGAACCAACATTGCCATAAGCGGGACtgtaaccctctttccaaattacatatgctaa 369 0.3659 MPLRLTCVASVMRSLKELPMKDYWFEYMSNGTLASLFFNEVKLDWKLRLEIAFGVARGLAYLHEECITLIIHCDIKPQDILLDVYYNARISDFGLAKLLKMNQSRTNIAISGTVTLFPNYIC 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01354 122 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 25 113 - -
Cca01g01354 122 SUPERFAMILY Protein kinase-like (PK-like) 23 108 IPR011009 -
Cca01g01354 122 Pfam Protein kinase domain 25 108 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g01354 122 Gene3D Transferase(Phosphotransferase) domain 1 5 121 - -
Cca01g01354 122 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RLK1 25 113 - -
Cca01g01354 122 ProSiteProfiles Protein kinase domain profile. 1 122 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01354 Cca-Chr1 26124661 26125239 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01354 25 121 Receptor kinase-like Gene Family AT2G23950 50.000 1.36e-25 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Cca01g01354 Pkinase 5.8e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01354 - - pvu:PHAVU_010G032000g 159.844