LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca01g01352	ATGGCTTCCCCTTTGCTTCCCCTTCTCTTCTGCTCAATGATTCTGTTACCCTTTGTTCTAGCCCAAACCAAAAGCGTTATGGTCATTGGTGACTCTCACACTGCAACAACCAGCACCTCCCCATGGTTGGTTTCATCACCTTCCGGTGACTTTGCCTTTGGCTTCCTCCCACTTGAGGACACTCCCAACACTTTCATACTTTGCATTTGGTATGCAAAGATTCCAGACAAGACCATAGTTTGGTTTGCCAATAGGGACAAGCCTGCCCCAAAGGACTCAAAAGTGGTGCTTTCTGCTGATGATGGGTTGGTCCTCACTGCTCCAAATGGTGATCAGTTATGGACTTCTGAGGGCCTTAGTGTTAAAGTTTCTAGTGGTGTTTTTAATGACACTGGCAACTTGATGCTTAAGGATAGTGGCTCAAACAGTGCTTGGGAGAGTTTCAAGGATTACAGAGACACCTTGCTGCCCTATCAGACTCTGGGAAGTGATCAGAAGCTTTCTTCTAGGCTTAAGGAGAATGATTTCAACCTGGGCAGGTTTGAGTTATTGTTTCAAAATGATGGTAACCTTGTGATGCACTCTATAAATTTGCCATCTGAGTATGCTAATGAGAATTACTATGAAAGTGGAACCATTGCGTCCAACACTTCAAGTGCTGGAACTCAATTGGTTTTTGATGGATTAGGAGGGTTGTATATTTTGAGAGAGAACAAAGAAAAATTCAACTTTTCAGAAGGGGGTGGTAGAGTTTCTACCACCCAATTTTACCTAAGAGCAACTCTTAATTTTGATGGGGTGTTCACACTCTATCAACATCCAAAGGGTTCTTCTGGAAGTGGAGGTTGGACCCCAGTGTGGTCTAAACCAGATAATATCTGTAAGGCTAATATGGTTGATAAAGGTAGTGGGGTTTGTGGATACAATAGCATTTGCAGTTTAAGAGATGATAACAGGCCAACATGTAAGTGCCCAAAATGGTACTCACTGGTTGATCCTAATGATCCCAATGGTAGCTGCGAACCAGATTTTGTACAAGCATGTGTTGGAGATGAACTTAGAGAGGATCTCTATGATTTTGAGGTGTTGATAGATACTGATTGGCCTTTGTCAGATTATGTTCTTCAAAAGCCCTTCACTGAAGACCAATGCAGACAATCTTGTAAGGAAGATTGCATGTGTTCTGTTGCCATTTTCAGGCTAGGTGACAGCTGCTGGAAGAAGAAGTTGCCACTTTCAAATGGTAGAGTTGATACCACACTTAATGGTGCAAAGGCCTTCATGAAAGTGAGGAAAGACAACTCATCATTGCTTAATCCTCCGATCATTGTGAAGAAGAAGGACAGGAGCACTTTGATTTTGGTTGGCTCGGTGCTTTTGGGTGGTTCTGCTTGTCTCAATCTCATATTTGTTGGAGCAATCTGCTTGAGCACTTCCTATGTTCTTCAGTACAAGAAGAAGCTTAGAAGTGTTGGCAAAATTGACACTACAGTGGAAACCAATTTGCGTTGCTTCACCTATGAGGAACTTGAGGAAGCCACCAATGGCTTTGACAAAGTGCTAGGAAAGGGAGCTTTTGGTGTTGTGTATGAAGGAGTCATCAACATGAGTTCCGTTACTCGCGTGGCAGTAAAAAAGCTGAACACTTTTCTCTTGGAAGATGTTCAGAAGGAATTCAAGAATGAGCTGAAAGTCATTGGCTTCACTCACCATAGGAACTTGGTTCGTTTACTTGGATTCTGCGAGACTGAATCAGAAAGGTTGCTGGTTTATGAGTTCATGAGCAATGGCACTTTAGCAAGTCTTCTTTTCAATGTGGAGAAACCAAGTTGGAAACTGAGGCAACAAATTGCAAATGGGGTTGCTAGAGGACTTGTATATTTGCATGAAGAGTGCAGCACACAGATCATCCATTGTGACATAAAGCCTCAAAACATACTCCTTGATGATTACCATATTGCAAGAATTTCTGACTTTGGATTGGCCAAGCTTTTGAACATGAACCAAACCAGAACCAACACTGCCATAAGGGGAACAAAAGGGTATGTTGCAATTGAATGGTTCAAAAACATGCCAATCACGGCTAAAGTGGATGTCTATAGTTATGGGGTGATGTTGCTTGAGATAGTTTCATGCAGAAAAAGTGTACAGTTTGAGGAAGAAGATGAAGAAAAAGCAATCCTAACCGATTGGGCTTATGACTGCTATAATGAAGGTGCTCTTCATGCCTTGGTTGAGGATGACAAAGAGGCATTGGATGACATGAATACCTTGGAGAAGTTGGTAATGATAGCCCTTTGGTGTGTGCAAGAGGATCCTGATCTTAGACCAACCATGAGAAATGTGACACAGATGCTTGAAGGTGTTGTTGAAGTGAAAGTGCCACCATGCCCCTCACTAATTAGCATTCAATATTCCCTAAATTAA	2427	0.4223	MASPLLPLLFCSMILLPFVLAQTKSVMVIGDSHTATTSTSPWLVSSPSGDFAFGFLPLEDTPNTFILCIWYAKIPDKTIVWFANRDKPAPKDSKVVLSADDGLVLTAPNGDQLWTSEGLSVKVSSGVFNDTGNLMLKDSGSNSAWESFKDYRDTLLPYQTLGSDQKLSSRLKENDFNLGRFELLFQNDGNLVMHSINLPSEYANENYYESGTIASNTSSAGTQLVFDGLGGLYILRENKEKFNFSEGGGRVSTTQFYLRATLNFDGVFTLYQHPKGSSGSGGWTPVWSKPDNICKANMVDKGSGVCGYNSICSLRDDNRPTCKCPKWYSLVDPNDPNGSCEPDFVQACVGDELREDLYDFEVLIDTDWPLSDYVLQKPFTEDQCRQSCKEDCMCSVAIFRLGDSCWKKKLPLSNGRVDTTLNGAKAFMKVRKDNSSLLNPPIIVKKKDRSTLILVGSVLLGGSACLNLIFVGAICLSTSYVLQYKKKLRSVGKIDTTVETNLRCFTYEELEEATNGFDKVLGKGAFGVVYEGVINMSSVTRVAVKKLNTFLLEDVQKEFKNELKVIGFTHHRNLVRLLGFCETESERLLVYEFMSNGTLASLLFNVEKPSWKLRQQIANGVARGLVYLHEECSTQIIHCDIKPQNILLDDYHIARISDFGLAKLLNMNQTRTNTAIRGTKGYVAIEWFKNMPITAKVDVYSYGVMLLEIVSCRKSVQFEEEDEEKAILTDWAYDCYNEGALHALVEDDKEALDDMNTLEKLVMIALWCVQEDPDLRPTMRNVTQMLEGVVEVKVPPCPSLISIQYSLN	808

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca01g01352	808	Pfam	D-mannose binding lectin	78	167	IPR001480	-
	Cca01g01352	808	Gene3D	Transferase(Phosphotransferase) domain 1	594	793	-	-
	Cca01g01352	808	Gene3D	-	33	150	IPR036426	-
	Cca01g01352	808	Gene3D	Phosphorylase Kinase; domain 1	490	593	-	-
	Cca01g01352	808	SMART	serkin_6	515	786	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Cca01g01352	808	PIRSF	SRK	1	807	IPR024171	GO:0004674
	Cca01g01352	808	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RLK1	23	802	-	-
	Cca01g01352	808	CDD	B_lectin	43	148	IPR001480	-
	Cca01g01352	808	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	636	648	IPR008271	GO:0004672\|GO:0006468
	Cca01g01352	808	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5	23	802	-	-
	Cca01g01352	808	ProSiteProfiles	Protein kinase domain profile.	515	790	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Cca01g01352	808	Gene3D	-	151	278	IPR036426	-
	Cca01g01352	808	SMART	blect_4	34	152	IPR001480	-
	Cca01g01352	808	Pfam	Protein kinase domain	518	784	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Cca01g01352	808	SUPERFAMILY	Protein kinase-like (PK-like)	497	787	IPR011009	-
	Cca01g01352	808	SUPERFAMILY	alpha-D-mannose-specific plant lectins	65	212	IPR036426	-
	Cca01g01352	808	ProSitePatterns	Protein kinases ATP-binding region signature.	521	546	IPR017441	GO:0005524
	Cca01g01352	808	ProSiteProfiles	Bulb-type lectin domain profile.	34	149	IPR001480	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca01g01352	Cca-Chr1	26106603	26109556	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca01g01352	501	788	Receptor kinase-like Gene Family	AT5G16000	43.003	2.41e-70	242

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Cca01g01352		Pkinase	2.3e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca01g01352	-		-	gmx:100815462	1352.42