Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01325 atgacactcccagacCCATTACTCTCCTCGCTTGCTCTCCGCAATTTCTACCTCGTTCCTTGCTCAATTCCCGCCACTTTTCTGCTAGTAGCAGAGAAGGATATGGCTGAGGAGAAATCAGAGCAGTGTTGGATGGACAAAGAACAAACTAACGTTGCCTCTGGCTCTTCTGTATCAGAAGCCAAAGACAATGACAATGTTATGCTCATTTCATCAAGGAAATGTAGCCCGGGATCAGCATTGCCATCTAATCGGAGAACCACCGGCCCTGTTAGACGTGCAAAGGGTGGTTGGACTGCGGCGGAGGATGAGACATTAAGGAAGGCTGTTTCAGCTTTTAACGCAAAGAATTGGAAGAAAATAGCTGAGTTTTTTCCGGATAGAACGGAAGTTCAATGTCTGCATAGATGGCAAAAAGTTCTTAATCCAGAACTCGTTAAAGGACCTTGGACTCAGGAGGAGGATGATAAAATAGTTGAATTGGTGTCTATACATGGACCTACAAAATGGTCTTTGATAGCCAAATCTTTGCCCGGTCGGATAGGAAAACAGTGCCGAGAACGGTGGCATAATCATCTTAATCCTGATATAAAGAAGGATGCCTGGACTTTTGAGGAGGAATTGGCCCTTATGGATGCTCATCGTATATATGGAAACAAATGGGCTGAAATAGCGAAGGTTCTTCATGGAAGGACTGATAATGCAATAAAGAACCACTGGAATAGTTCTTTGAAGAAAAAGATGGATTCCTATCTAGATACTGGAAAACTTCCGTCCACTCCAAAGTACAGTGCACAAGTTGCTGTCAAAGACACAGTTAGCCATTCTACATTTAACACAATACATGTTTGTTCAAATAAAGGATTAGATGACAGCATTGCATCATTATCTAAAACTACAGACATTAGTAAGCAGGATAACAGTGATAAGAATCAACTTGAGTCCTCAGGAACAGTTAGAGAGGTTGGTGATTCTTCAAATGTTCCTGCAAATGAATCTCATGATTCTGACTGCATAAAATGCAATGGATCATCCAACAAAGCTCTCATCTGTAGTAACGCAAAAGTAGTGTCAGGAGATAATTTGGGAATAAACAGTGAGCCAAAATTTGAGAATCCTGTACTCAATGGCAACCCAACAACTGATCATTATATGAATAAAGGTGAAATAAACAGCGACAGGTTAACCAGAATATTTTTTTCTAAGGAAAGTCCGCCACTTGGTTCTTCTAATGAGCCTCCGCAGTTTGCTGAATCACTTGCTTTAGATTCTAATCTTCATTTTAATATCCCTGGCCTACAGAATGATTTATTTTCCTCTCCAATGCTGTCACCTGTTGGTTTCTTAACTCCACCTCCTGTGAAGGGAATTGAATTAAGCCCAGAATCTCCTGAATCAATATTGAAAAAGGCAGCTAAAACTTTCCCAACTCCTTCCATATTGAGGAAGAGAAGGAATAGAGTCCAAAACCCAGTCACTCCTAGTAAGGTTGCCAAAGAATTACATGCTTATACTGAACGAGAGAGAACAAATGATAATTTTGGTTCTGAAGTTGTGAGCTTATCTCTGAGTCTAGCATGCCATAGCTATGAGAGCAACATTCCCCATAATACGGCTTTCAGTGCAACTCCCCCATACCGATTAAGATCCAAGCAAACAACAATTAAGTCTTTGGAGAAAGAACTTGAGTCTGCAGTTGACAAAGAGAAGCCGGAAAAATTGCAAAGAGGAGTGTTGTGGTGA 1743 0.405 MTLPDPLLSSLALRNFYLVPCSIPATFLLVAEKDMAEEKSEQCWMDKEQTNVASGSSVSEAKDNDNVMLISSRKCSPGSALPSNRRTTGPVRRAKGGWTAAEDETLRKAVSAFNAKNWKKIAEFFPDRTEVQCLHRWQKVLNPELVKGPWTQEEDDKIVELVSIHGPTKWSLIAKSLPGRIGKQCRERWHNHLNPDIKKDAWTFEEELALMDAHRIYGNKWAEIAKVLHGRTDNAIKNHWNSSLKKKMDSYLDTGKLPSTPKYSAQVAVKDTVSHSTFNTIHVCSNKGLDDSIASLSKTTDISKQDNSDKNQLESSGTVREVGDSSNVPANESHDSDCIKCNGSSNKALICSNAKVVSGDNLGINSEPKFENPVLNGNPTTDHYMNKGEINSDRLTRIFFSKESPPLGSSNEPPQFAESLALDSNLHFNIPGLQNDLFSSPMLSPVGFLTPPPVKGIELSPESPESILKKAAKTFPTPSILRKRRNRVQNPVTPSKVAKELHAYTERERTNDNFGSEVVSLSLSLACHSYESNIPHNTAFSATPPYRLRSKQTTIKSLEKELESAVDKEKPEKLQRGVLW 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01325 580 MobiDBLite consensus disorder prediction 309 337 - -
Cca01g01325 580 SMART sant 198 246 IPR001005 -
Cca01g01325 580 SMART sant 94 143 IPR001005 -
Cca01g01325 580 SMART sant 146 195 IPR001005 -
Cca01g01325 580 ProSiteProfiles Myb-like domain profile. 90 141 IPR001005 -
Cca01g01325 580 Coils Coil 548 568 - -
Cca01g01325 580 PANTHER MYB PROTEIN-RELATED 410 513 - -
Cca01g01325 580 PANTHER MYB PROTEIN-RELATED 68 345 - -
Cca01g01325 580 SUPERFAMILY Homeodomain-like 144 240 IPR009057 -
Cca01g01325 580 Gene3D - 200 267 - -
Cca01g01325 580 MobiDBLite consensus disorder prediction 561 580 - -
Cca01g01325 580 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 142 197 IPR017930 -
Cca01g01325 580 PANTHER MYB-RELATED PROTEIN B-LIKE 68 345 - -
Cca01g01325 580 MobiDBLite consensus disorder prediction 300 337 - -
Cca01g01325 580 Pfam Myb-like DNA-binding domain 147 193 IPR001005 -
Cca01g01325 580 Pfam Myb-like DNA-binding domain 199 242 IPR001005 -
Cca01g01325 580 Pfam Myb-like DNA-binding domain 95 141 IPR001005 -
Cca01g01325 580 Gene3D - 147 198 - -
Cca01g01325 580 CDD SANT 149 193 IPR001005 -
Cca01g01325 580 Gene3D - 94 146 - -
Cca01g01325 580 ProSiteProfiles Myb-like domain profile. 194 244 IPR001005 -
Cca01g01325 580 MobiDBLite consensus disorder prediction 74 98 - -
Cca01g01325 580 ProSiteProfiles Myb-like domain profile. 142 193 IPR001005 -
Cca01g01325 580 CDD SANT 98 141 IPR001005 -
Cca01g01325 580 SUPERFAMILY Homeodomain-like 96 151 IPR009057 -
Cca01g01325 580 CDD SANT 201 244 IPR001005 -
Cca01g01325 580 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 95 141 IPR017930 -
Cca01g01325 580 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 198 248 IPR017930 -
Cca01g01325 580 PANTHER MYB-RELATED PROTEIN B-LIKE 410 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01325 Cca-Chr1 24947556 24955958 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01325 11 570 MYB Transcription Factor Family AT3G09370 41.056 6.52e-120 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca01g01325 Myb_DNA-binding 4.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01325 K09422 - gmx:100777236 645.966