Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01321 ATGGCTTCTCTGCTCCCTCCAACTGCTACTTGCACACTCAAACACAACCACATGGCCTGTCCCCTCAGACCCATCACCCCAACCATTGCCAATGCTTCTTTCTCATCATTAAACCACCGTTTGAAGAGCAACTCCGCAAAGTGCCATGCGTTTTTGGATGAAGTGGCCAAAGGGTTGTTTAGTGATGGTCTCGAATCGGGAATAGTGCAGTTCCAGAGAGCGACTGAAGGCTTATCCGACATGCAGAGGTGGGGCTTCCTCGTGTTTGGTGGCTTGACTTGGATTTACTTGACTGCGAGGCCAGGTGTTCTTGTTGGCGCCATTGATGCGTACCTTTTGGCGCCTCTTCAACTGGGTTTGGACAATTTGTCTGGGAGGAGGAACCTCAAGAGGAGTGACTTTGTGGTTGGAGATAAGCTTGGTGAAGGGTCCTTTGGCGTTGTCTATTCGGGTGTCGTGGTTCCAAAGAACGGGAATGGGGATCTGAATGTGGTGCAGAAGAGGGGGAGAGGAAAGGCAACTCAGGTGAATGCCAAGTCTAAGGATAAAGTCATTCTAAAAAAGGTCAAGGTTGGAATCCAAGGTGCTGAAGAGTTTGGTGATTATGAGGAGTGGTTCAATTACAGGCTATCTAGGGCTGCACCTGAAACATGTGCTGATTTCCTTGGAAGTTTTGTAGCTGATCAAACAAATTCACAATTTACAAAAGGTGGAAAATGGCTTGTTTGGAAGTTTGAGGGAGATCGTACTCTTGCTGATTACATGAAAGATCGCAACTTTCCTTCAAACTTAGAATCTGTGATGTTTGGACGGGTCTTGCAAGGTGTCGACTCTTCAAAACGAAATGCATTGATCATCAAGCAAATAATGCGCCAGATCATTACATCTCTTAGGAAAATCCATGATACAGGCATTGTTCACAGGGATGTAAAGCCAGCCAACTTAGTGGTTACAAAACGAGGGCAGATTAAACTCATTGATTTTGGTGCTGCAACGGACCTGCGGATTGGAAAGAATTATGTTCCCAATCGCACTCTTTTGGATCCTGACTACTGCCCACCAGAATTATATGTACTTCCAGAAGAAACACCAAGTCCTCCACCAGAGCCAATTGCTGCTTTCCTTTCACCAATCCTGTGGCAGTTAAACAGTCCTGATTTGTTTGATATGTATTCATCTGGGATTGTACTCCTGCAAATGGCAATACCAAGCTTAAGGTCTCCTGCTGCTTTGAAGAATTTCAACTTGGAACTAAAAACTTGTGGATATGATTTGAAAAAATGGAGGGACTACACTCGCCTTAGGCCTGACTTCCAAATTCTAGATAGTGAATCTGGCAGCTGCAGTCCTTTCAAAATTAAGTATAAGCAGAAAGTGAGCTGCTTAGCAATGAGGAGCACATTTGATTTCAAAGGTCTCCCACCGCAAGCCCGCGGGACTCAATTTCTGGCATGCAATAAGGCTGAGTACTTCAAAGCTTACAGGAGGAAAAATTATTGCTGTTGTATACATTTATATCTTCGGTGTAACTTATATGCCAACAATCTCAATCAGGACATACAGCAAGTAGAGCTGCGTTCTATTGACACTAACTAG 1596 0.4455 MASLLPPTATCTLKHNHMACPLRPITPTIANASFSSLNHRLKSNSAKCHAFLDEVAKGLFSDGLESGIVQFQRATEGLSDMQRWGFLVFGGLTWIYLTARPGVLVGAIDAYLLAPLQLGLDNLSGRRNLKRSDFVVGDKLGEGSFGVVYSGVVVPKNGNGDLNVVQKRGRGKATQVNAKSKDKVILKKVKVGIQGAEEFGDYEEWFNYRLSRAAPETCADFLGSFVADQTNSQFTKGGKWLVWKFEGDRTLADYMKDRNFPSNLESVMFGRVLQGVDSSKRNALIIKQIMRQIITSLRKIHDTGIVHRDVKPANLVVTKRGQIKLIDFGAATDLRIGKNYVPNRTLLDPDYCPPELYVLPEETPSPPPEPIAAFLSPILWQLNSPDLFDMYSSGIVLLQMAIPSLRSPAALKNFNLELKTCGYDLKKWRDYTRLRPDFQILDSESGSCSPFKIKYKQKVSCLAMRSTFDFKGLPPQARGTQFLACNKAEYFKAYRRKNYCCCIHLYLRCNLYANNLNQDIQQVELRSIDTN 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01321 531 ProSiteProfiles Protein kinase domain profile. 134 531 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g01321 531 SMART serkin_6 134 483 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g01321 531 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 1 446 IPR044803 GO:0004674|GO:0009579
Cca01g01321 531 ProSitePatterns Serine/Threonine protein kinases active-site signature. 305 317 IPR008271 GO:0004672|GO:0006468
Cca01g01321 531 Gene3D Phosphorylase Kinase; domain 1 121 245 - -
Cca01g01321 531 SUPERFAMILY Protein kinase-like (PK-like) 130 405 IPR011009 -
Cca01g01321 531 Pfam Protein kinase domain 285 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g01321 531 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC 1 446 - -
Cca01g01321 531 Gene3D Transferase(Phosphotransferase) domain 1 276 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01321 Cca-Chr1 24773996 24783268 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01321 134 334 MAP Kinase Kinase Kinase AT3G13530 24.510 2.81e-10 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Cca01g01321 Pkinase 6.2e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01321 - - gmx:100788727 738.413