Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01319 ATGGGGCCAAACGCTGCAGCGGCGAAACAAGCGGAGAAGCTCAGAAATGACGGCAACACTTACTTCAAGAAAGACCGTTTTGGAGCCGCCATCGACGCTTACACCGAGGCAATTACGCTGTGCCCCAATGTTCCGGTTTATTGGACCAATCGTGCGCTGTGTCATCTCAAGCGCAATGATTGGGAGAGAGTAGAGGAAGATTCCCGGAGAGCAATTCAGTTGGACAGCAATTCGGTTAAGGCCCACTATATGTTGGGGCTTGCATTGTTACAGAGACAAGAATCTTCCAAGGGAATCAGAGAACTGGAGAAGGCTTTGGATCTTGGGAGAGGGGCCAATCCCAAGGGCTATATGGTAGAAGAAATATGGCAAGAGCTTGCAAAGGCAAAATACCATGAGTGGGAACGAACATCATCCAAACGATCATGGGAATTGCAGAGCTTGAAAGAAGCTTGCGAGTCTGCATTGAAGGAAAAACATTTTCTCGATGTCACCCAAATGGAAGGATTTGTAGAAGATGCTACCACTTCCCATTTGGAACAATTAGAAGCTTTAGAAAGAGTGATCAATAAAAAAGCAGAGGCTGACACACCTACTGAGGTGCCAGATTATTTGTGCTGTAGAATCACACTCGATATTTATCATGATCCTGTAATCACTCCAAGTGGACTTACATATGAGAGAGAAGTGATTCTTGAACATCTTCAGAAGGTGGGTAAGTTCGACCCAATCACGCGGGAACCCCTTGATCAATCACAGTTAATTAACGGAAGAATAAGTTACAAGTTTCGTGGCGTCCTGACTTTTGAACATCAATCTAATTATCAAGTGGTAGAAAGGTGCGCCCAACTCCGGCGAACACAATGCCGAAATTCGCTCCGGGAAATACGCCGCCACGCCCCGCCACCGTTGCCGGCGCGGGTAGCCCACGCGCCTAGCTCCGGCGAGACCCACTCGCCGTCGCCACCACAGAAAGAGTCGCCGGAGCCTCCTGAGTCCATTCCATGGGTTGGTGACGTCCCATTTGGCGCATATTTGAGTAGATCTGAGTTTTTGAGTTTTTTTCCTTTTCCGGTGACGTCCCACGCGCCTAGCTCCAACGAGACCCACTCGCCGCTGCTGTCACAGAACTGGTCGCCGGAGTCTCCTAAGTCTGTTCCACGGCCCACTCATCGGTGTCGCCATAGACAAAGTCGCCGAATCAATCCATTAAGTTACTACCATAAGATTTTTTGA 1236 0.4895 MGPNAAAAKQAEKLRNDGNTYFKKDRFGAAIDAYTEAITLCPNVPVYWTNRALCHLKRNDWERVEEDSRRAIQLDSNSVKAHYMLGLALLQRQESSKGIRELEKALDLGRGANPKGYMVEEIWQELAKAKYHEWERTSSKRSWELQSLKEACESALKEKHFLDVTQMEGFVEDATTSHLEQLEALERVINKKAEADTPTEVPDYLCCRITLDIYHDPVITPSGLTYEREVILEHLQKVGKFDPITREPLDQSQLINGRISYKFRGVLTFEHQSNYQVVERCAQLRRTQCRNSLREIRRHAPPPLPARVAHAPSSGETHSPSPPQKESPEPPESIPWVGDVPFGAYLSRSEFLSFFPFPVTSHAPSSNETHSPLLSQNWSPESPKSVPRPTHRCRHRQSRRINPLSYYHKIF 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01319 411 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 5 257 IPR045200 GO:0000209|GO:0061630
Cca01g01319 411 Gene3D Tetratricopeptide repeat domain 4 141 IPR011990 GO:0005515
Cca01g01319 411 MobiDBLite consensus disorder prediction 365 396 - -
Cca01g01319 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 180 264 IPR013083 -
Cca01g01319 411 Pfam Tetratricopeptide repeat 18 43 IPR019734 GO:0005515
Cca01g01319 411 MobiDBLite consensus disorder prediction 295 334 - -
Cca01g01319 411 SUPERFAMILY TPR-like 9 128 IPR011990 GO:0005515
Cca01g01319 411 ProSiteProfiles U-box domain profile. 200 274 IPR003613 GO:0004842|GO:0016567
Cca01g01319 411 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
Cca01g01319 411 SMART Ubox_2 204 268 IPR003613 GO:0004842|GO:0016567
Cca01g01319 411 MobiDBLite consensus disorder prediction 365 384 - -
Cca01g01319 411 Pfam U-box domain 201 256 IPR003613 GO:0004842|GO:0016567
Cca01g01319 411 SMART tpr_5 79 112 IPR019734 GO:0005515
Cca01g01319 411 SMART tpr_5 45 78 IPR019734 GO:0005515
Cca01g01319 411 SMART tpr_5 11 44 IPR019734 GO:0005515
Cca01g01319 411 SUPERFAMILY RING/U-box 194 256 - -
Cca01g01319 411 PANTHER OS08G0113300 PROTEIN 5 257 - -
Cca01g01319 411 CDD RING-Ubox_CHIP 201 255 IPR045202 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01319 5 255 U-box Gene Family AT3G07370 66.932 5.21e-126 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01319 K09561 - gmx:100796519 478.789