LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca01g01314	ATGAAGGAGGGCGCTGAGCGGCTGGATTTGGAAAAGCTGAGAGTGATCTCCGCCGTGGGGCGCGGCGCGAAGGGCGTGGTGTTCCTGGCGAGGACCGGTGAGCGGTCGCGGGACGCGTGCGTGGCTCTGAAGGTGATATCGAAGGCACTGATCCTTCAGAAGAAGGCGAGGAACGAGGCGGAGGAGTACAAGAGGGTGTCGTTCGAAGAGCAAGCGCTGCGTCGTTTCGATCACCCTCTTCTGCCGCGGCTGCGAGGGGTTTTCGAAACCGACAAGGTCCTTGGCTTCGCCATTGATTACTGCCACGGTGGCACCCTCCACTCTCTCCGCAAGAAACAGACCGAGAAAATGTTCTCCGATGATACCATCAGGTTTTACGCTGTGGAATTGGTCCTCGCATTGGAGTATTTGCACAATTTGGGAATAGTGTATCGAGATTTGAAGCCAGAGAATGTGATGATTCAAGAAAACGGACACATAATGCTCGTCGATTTTGATCTCTCCAAAAAGCTAAACCCTAAATCCCCCGAATCACTGAGTCACAACTCGTCCCCGAGTCCCGACTCGGTGAAACGCGCGACTAAGAAACGATCATCGCGGCTCTTCAGTTTCTGCAACTCGGGCATCACGCCGTGTGACTCGGACTCTGTGCCCCGAATCGACAGAGCCAACTCAGCGCGTGGAACCGAGTTCGACTCGGTGGAGAAGTCAAACTCGTTCGTTGGAACGGAAGAGTACGTGGCACCTGAAATAGTGTCAGGGAAAGGTCACGGCTTCGGCGTGGATTGGTGGTCACTCGGCGTCGTTTTGTACGAGATGCTGTACGGAACGACGCCGTTTAAGGGCGCGAATCGGAAGGAAACGTTTTACCGTATTTTGACAAAGGAACCAGAGTTAACGGGGGAGAAGACGGCGTTAAGGGATTTGATTCGGAGATTGCTGGAGAAAGATCCTGAGCGTCGGATCCAGGTGGACGAAATCAAGGGCCACGATTTCTTCAAAGGGGTTAAGTGGGACACGGTGTTGCACATTGCGAGGCCACCGTATATTCCAGAAAGTGAGGTTGCGAACAAAGTGGGGTTTACCAAAAACGACGTCGAAGTGTTTGTGGACGAGGTGTTTTTTCCCACGAGTGATGATGGCGGAGAGAAGAATAACACGGTGTTGGAAAAGAAAGTCAATGGTGAGAATACGGTGTGGGTACATGAATTGAGGCATGATCCCACCAAGAACAACGACGATTTTTTTATTTTTTGA	1257	0.5227	MKEGAERLDLEKLRVISAVGRGAKGVVFLARTGERSRDACVALKVISKALILQKKARNEAEEYKRVSFEEQALRRFDHPLLPRLRGVFETDKVLGFAIDYCHGGTLHSLRKKQTEKMFSDDTIRFYAVELVLALEYLHNLGIVYRDLKPENVMIQENGHIMLVDFDLSKKLNPKSPESLSHNSSPSPDSVKRATKKRSSRLFSFCNSGITPCDSDSVPRIDRANSARGTEFDSVEKSNSFVGTEEYVAPEIVSGKGHGFGVDWWSLGVVLYEMLYGTTPFKGANRKETFYRILTKEPELTGEKTALRDLIRRLLEKDPERRIQVDEIKGHDFFKGVKWDTVLHIARPPYIPESEVANKVGFTKNDVEVFVDEVFFPTSDDGGEKNNTVLEKKVNGENTVWVHELRHDPTKNNDDFFIF	418

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca01g01314	418	Gene3D	Transferase(Phosphotransferase) domain 1	233	352	-	-
	Cca01g01314	418	MobiDBLite	consensus disorder prediction	173	192	-	-
	Cca01g01314	418	SUPERFAMILY	Protein kinase-like (PK-like)	11	354	IPR011009	-
	Cca01g01314	418	Pfam	Protein kinase domain	232	333	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Cca01g01314	418	Pfam	Protein kinase domain	15	176	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Cca01g01314	418	Gene3D	Phosphorylase Kinase; domain 1	13	104	-	-
	Cca01g01314	418	Gene3D	Transferase(Phosphotransferase) domain 1	105	175	-	-
	Cca01g01314	418	PANTHER	SERINE/THREONINE-KINASE OXI1-LIKE PROTEIN	7	396	-	-
	Cca01g01314	418	ProSiteProfiles	Protein kinase domain profile.	13	333	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Cca01g01314	418	SMART	serkin_6	13	333	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Cca01g01314	418	PANTHER	FLIPPASE KINASE 1-RELATED	7	396	-	-
	Cca01g01314	418	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	142	154	IPR008271	GO:0004672\|GO:0006468
	Cca01g01314	418	MobiDBLite	consensus disorder prediction	173	189	-	-
	Cca01g01314	418	ProSiteProfiles	AGC-kinase C-terminal domain profile.	334	418	IPR000961	GO:0004674\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca01g01314	Cca-Chr1	24410895	24413601	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca01g01314	1	418	AGC Kinase Gene Family	AT3G25250	58.161	2.90e-158	451

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Cca01g01314		Pkinase	4.2e-33	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca01g01314	K20714		-	gmx:100785773	642.114