Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca01g01303 | ATGGCATGCTGCGTGTGCTACAAGGACAGACTAGTGAACAACAATGGCAACAACGCTATTGCGAGGTCTGCAGGAACTACAATATCACCATTACCGCAAGAAGAGAGTGTGAGTAGGGGTCTGGACGAGTGGACGATTGAGTCTTACGAGAAGGTAGTGGTTGGAGAGAGTAGACGAGTTCCTGGACCGAACGATGGATGCTGTTGGATATGCTTGTCGGAGTACAATAGCAAAGAGACAGTAAGATGCATCCCTGAATGCAACCACTGCTTCCACGCTCACTGCATAGACGAGTGGCTTCGCATCAACTCCACATGCCCAGTTTGTCGCAACTCTCCCTCACCTTCTCCTCTTCATCTTACTTCTTGA | 369 | 0.4932 | MACCVCYKDRLVNNNGNNAIARSAGTTISPLPQEESVSRGLDEWTIESYEKVVVGESRRVPGPNDGCCWICLSEYNSKETVRCIPECNHCFHAHCIDEWLRINSTCPVCRNSPSPSPLHLTS | 122 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca01g01303 | 122 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 29 | 115 | IPR013083 | - | |
Cca01g01303 | 122 | SMART | ring_2 | 68 | 109 | IPR001841 | - | |
Cca01g01303 | 122 | SUPERFAMILY | RING/U-box | 67 | 113 | - | - | |
Cca01g01303 | 122 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 1 | 118 | - | - | |
Cca01g01303 | 122 | PANTHER | RING-H2 FINGER PROTEIN ATL21A-RELATED | 1 | 118 | - | - | |
Cca01g01303 | 122 | ProSiteProfiles | Zinc finger RING-type profile. | 68 | 110 | IPR001841 | - | |
Cca01g01303 | 122 | Pfam | Ring finger domain | 68 | 110 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca01g01303 | Cca-Chr1 | 23816510 | 23816878 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca01g01303 | 9 | 114 | C3H Transcription Factor Family | AT1G28040 | 60.377 | 7.38e-38 | 127 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca01g01303 | - | - | ccaj:109813571 | 271.166 |