Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01303 ATGGCATGCTGCGTGTGCTACAAGGACAGACTAGTGAACAACAATGGCAACAACGCTATTGCGAGGTCTGCAGGAACTACAATATCACCATTACCGCAAGAAGAGAGTGTGAGTAGGGGTCTGGACGAGTGGACGATTGAGTCTTACGAGAAGGTAGTGGTTGGAGAGAGTAGACGAGTTCCTGGACCGAACGATGGATGCTGTTGGATATGCTTGTCGGAGTACAATAGCAAAGAGACAGTAAGATGCATCCCTGAATGCAACCACTGCTTCCACGCTCACTGCATAGACGAGTGGCTTCGCATCAACTCCACATGCCCAGTTTGTCGCAACTCTCCCTCACCTTCTCCTCTTCATCTTACTTCTTGA 369 0.4932 MACCVCYKDRLVNNNGNNAIARSAGTTISPLPQEESVSRGLDEWTIESYEKVVVGESRRVPGPNDGCCWICLSEYNSKETVRCIPECNHCFHAHCIDEWLRINSTCPVCRNSPSPSPLHLTS 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01303 122 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 115 IPR013083 -
Cca01g01303 122 SMART ring_2 68 109 IPR001841 -
Cca01g01303 122 SUPERFAMILY RING/U-box 67 113 - -
Cca01g01303 122 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 118 - -
Cca01g01303 122 PANTHER RING-H2 FINGER PROTEIN ATL21A-RELATED 1 118 - -
Cca01g01303 122 ProSiteProfiles Zinc finger RING-type profile. 68 110 IPR001841 -
Cca01g01303 122 Pfam Ring finger domain 68 110 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01303 Cca-Chr1 23816510 23816878 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01303 9 114 C3H Transcription Factor Family AT1G28040 60.377 7.38e-38 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01303 - - ccaj:109813571 271.166