Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01292 atgggtgaagtagtgaaaacaattgttctggagtcggtgctgaaggagcaAGAACTCGAAGCTACAAAGAAGAAGAGACCCGAGCAGTACGTTAAGGAATACGACGAGCAGGAGAAGGAATTGATTAGGTTGAAACATGAAGCCAAGTTGAAAGGTGGATTTTATGTGGATCCAGAGGCTAAGCTCTTGTTCACATCCGTGGTATTTATGCCATGA 216 0.3333 MGEVVKTIVLESVLKEQELEATKKKRPEQYVKEYDEQEKELIRLKHEAKLKGGFYVDPEAKLLFTSVVFMP 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01292 71 Pfam Ribosomal L30 N-terminal domain 14 58 IPR012988 -
Cca01g01292 71 PANTHER 60S RIBOSOMAL PROTEIN L7-3-RELATED 15 65 - -
Cca01g01292 71 PANTHER 60S RIBOSOMAL PROTEIN L7 15 65 IPR039699 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01292 Cca-Chr1 23400501 23400716 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01292 6 64 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 56.790 2.93e-18 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01292 K02937 - gmx:100305682 89.3521