Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01289 ATGAAGAATGACGCATTCGAAGATGAAAACGAACAGCAACAAACCTTCGAACCCTTTGATTGCTGTGTTTGTCTGGATCTATTATACAAGCCTATTGTGCTATCTTGTGGTCACATATCCTGTTTCTGGTGTGTCCACAAATCAATGAGTGGTTTGCATGAGTCCCATTGCCCAATTTGTAGGCATCCGTACTATCACTTTCCAACTATCTGTCAAATGCTTCACTTTTTGCTTCTTAAGATCTATCCTGATGCTTACAGGAGGAGAGAAAACCAGACACTTGAGGAAGAAGAGAAAATGGGCTGCTTCTCTCCTCAATTTGATGCTTATACATGTGGATCAAAAGTTGCTTTTGATCACCTTGGGAGATCACCGTGCTGCACTATTAAAAGTCCAGTTTCCAACTCATGCAACCTAGAATCCTTTGAATGTATGGAGCAATCAGGGTCTACTACAACACATAAAAGAGATGAATGTACAGCCGTATATCCTGTGCATGCTTCTACCAGAATACCTGAAGTTGTTGGGACTCCTGATGAAGGAAAAAAACTACCTCAGAATGAGCACAATCAGCAACAGAAAATATTAATTGCAGATGTTACATGTACAATGTGCAATCAGCTTCTCTTTCATCCTGTTGTTCTTAATTGTGGTCACGTTTGCTGTGAGACTTGTTTGATCAACATAGCTGAAGTGATCCTTAAATGCCAAGTTTGTAAAAGTCCACATCCAAGAGGTTCACCAAAAGTTTGTTTGGCACTTGATCACTTTTTGGAGGAGCAATTTCCAGATGAATATGCACAGCGAAGGAATGCAATGCAACTTAACCGAATCAAAGTTGAACTTGAGACCACATCTTGTATGTATCCTTGCCTACTAATTATCTTTACCTCTAAGACTCTGCTAGAATATCTTCTATGCCAATGGTTTGGCATGTTTGATATGTTAAAGCTAGAAGAATTAAAACTAGAAGAAAAATAA 981 0.3904 MKNDAFEDENEQQQTFEPFDCCVCLDLLYKPIVLSCGHISCFWCVHKSMSGLHESHCPICRHPYYHFPTICQMLHFLLLKIYPDAYRRRENQTLEEEEKMGCFSPQFDAYTCGSKVAFDHLGRSPCCTIKSPVSNSCNLESFECMEQSGSTTTHKRDECTAVYPVHASTRIPEVVGTPDEGKKLPQNEHNQQQKILIADVTCTMCNQLLFHPVVLNCGHVCCETCLINIAEVILKCQVCKSPHPRGSPKVCLALDHFLEEQFPDEYAQRRNAMQLNRIKVELETTSCMYPCLLIIFTSKTLLEYLLCQWFGMFDMLKLEELKLEEK 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01289 326 SMART ring_2 21 60 IPR001841 -
Cca01g01289 326 SMART ring_2 202 239 IPR001841 -
Cca01g01289 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 269 IPR013083 -
Cca01g01289 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 89 IPR013083 -
Cca01g01289 326 SUPERFAMILY RING/U-box 12 71 - -
Cca01g01289 326 SUPERFAMILY RING/U-box 196 244 - -
Cca01g01289 326 Pfam Zinc finger, C3HC4 type (RING finger) 20 64 - -
Cca01g01289 326 ProSiteProfiles Zinc finger RING-type profile. 202 240 IPR001841 -
Cca01g01289 326 ProSiteProfiles Zinc finger RING-type profile. 21 61 IPR001841 -
Cca01g01289 326 PANTHER UNCHARACTERIZED 9 278 - -
Cca01g01289 326 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRT1-LIKE 9 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01289 Cca-Chr1 23266976 23275309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01289 19 61 C3H Transcription Factor Family AT2G42030 39.535 1.94e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01289 - - aprc:113868764 465.692