Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01277 ATGGCAATGGCAGCTAGGTACACTGTGCGTTCGTTTGGGATCAGAAGAAACGAGAAGATCGCGTGCTATGTGACGTTGACGGGTGACAACGCGATGCAGCTTCTAGAGAGTGACTACCGGAAAAAGCTTTTTGGATGTTTAGAGGGTTTGTTCCACATCTACAATAGGACAATTAATGGAAAAGATAGTTTCAAAGTTCCTGCTGAAGACTCATTGCATCTGGTTGAAGCATTAAGTGTGGTTGTTACTGAACTTCCTTTAAATGATGCTAAGAGAGCTCTTGAGGCATTAAGCATACCAGTCATAACTCCTTTATAG 318 0.4245 MAMAARYTVRSFGIRRNEKIACYVTLTGDNAMQLLESDYRKKLFGCLEGLFHIYNRTINGKDSFKVPAEDSLHLVEALSVVVTELPLNDAKRALEALSIPVITPL 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01277 105 SUPERFAMILY RL5-like 4 40 IPR022803 -
Cca01g01277 105 Gene3D - 1 78 IPR022803 -
Cca01g01277 105 PANTHER TRANSPORTIN 3 AND IMPORTIN 13 31 105 - -
Cca01g01277 105 PANTHER TRANSPORTIN MOS14 31 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01277 Cca-Chr1 22882399 22883464 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01277 5 51 Cytoplasmic Ribosomal Protein Gene Family AT2G42740 68.085 8.59e-15 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01277 K15436 - gmx:100813996 120.553