Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01275 ATGGCCCCATCTTGCACACGTACTAGTACTACACATACACACTTTTTCCTTTCCTCAAAAATCCCTTTGATTTTGGTGAGGAATAAACAGCACCAACCCTTCGAGCAAGATAGAAAGAAAAAAAAAATGTCTCTTCCAAGACCAAGTGAGGATAAAGCCCCCTCTCAGCTGAAAGAAGGAGTAGCAGCAGCAGCCTCATCCTCTTCTTCATGGAACAGGCTACACACTTTCCCTCCTTTAACTCTACAGAACAAGAGTAGCAAAATTGAAGACAGTGATGAGGATATGTTCACAGTTCCAGATGTGGAAGCCACACCAACTAGTGTTCATTCTGCAGTGACTCTTCCAAATAGTAACCTCAACCAACATAATAATGTCACAGATCCTCAATTTCAAACGGGCTTTGCTGGAAAGCGCCGCAGGGGAAGAAACCCTGCAGATAAGGAGCATAGACGCCTCAAGAGGTTGTTGCGAAACAGAGTCTCTGCTCAACAAGCCCGCGAAAGAAAGAAGGTTTATGTGAATGACTTGGAATCAAGAGCCAAAGAGTTGCAAGATAAAAACGCTATTTTAGAAGAGCGTATCTCAACTTTGATCAATGAAAACACCATGCTGCGGAAGGTTCTTATGAACGCAAGACCAAAAGTTGATGATAGCAATGAACAAAAGCAGGACCAGTTAAGTAAGAGCTAA 693 0.4286 MAPSCTRTSTTHTHFFLSSKIPLILVRNKQHQPFEQDRKKKKMSLPRPSEDKAPSQLKEGVAAAASSSSSWNRLHTFPPLTLQNKSSKIEDSDEDMFTVPDVEATPTSVHSAVTLPNSNLNQHNNVTDPQFQTGFAGKRRRGRNPADKEHRRLKRLLRNRVSAQQARERKKVYVNDLESRAKELQDKNAILEERISTLINENTMLRKVLMNARPKVDDSNEQKQDQLSKS 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01275 230 MobiDBLite consensus disorder prediction 31 54 - -
Cca01g01275 230 SUPERFAMILY Leucine zipper domain 151 210 IPR046347 GO:0003700|GO:0006355
Cca01g01275 230 MobiDBLite consensus disorder prediction 61 78 - -
Cca01g01275 230 MobiDBLite consensus disorder prediction 211 230 - -
Cca01g01275 230 CDD bZIP_HY5-like 161 202 - -
Cca01g01275 230 PANTHER TRANSCRIPTION FACTOR HY5-LIKE 61 230 - -
Cca01g01275 230 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 61 230 IPR044280 GO:0000981|GO:0045944
Cca01g01275 230 MobiDBLite consensus disorder prediction 30 78 - -
Cca01g01275 230 SMART brlzneu 147 211 IPR004827 GO:0003700|GO:0006355
Cca01g01275 230 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 154 169 IPR004827 GO:0003700|GO:0006355
Cca01g01275 230 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 149 212 IPR004827 GO:0003700|GO:0006355
Cca01g01275 230 Pfam bZIP transcription factor 148 207 IPR004827 GO:0003700|GO:0006355
Cca01g01275 230 Coils Coil 167 201 - -
Cca01g01275 230 Gene3D Single helix bin 170 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01275 Cca-Chr1 22813518 22817800 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01275 108 219 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT3G17609 65.487 2.25e-41 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Cca01g01275 bZIP_1 4e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01275 K16241 - gmx:778143 322.783