LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca01g01274	ATGGACTTGAGGAATGCATGGGTTGGCTTCTTTCTGCTTTGTAGCTTCTTCCTTGTCACTTTCTGCGAACAAGATGGTTTCTTGAGTCTTTCTTGTGGTGGAAGAACCAGTTTGAGGGATTCATCTAACATTTCATGGGTCCCAGACAGCACCTACATAACCTCAGGCAAGACTACAACCATCACTTACAGTGATGGTTCCTCCTCATTGAACATCTCAGCTCGGTTCTTCTCGAATTCCAGAAGGCGAAAATGTTACAGAATACCAGCAAACAATTCAACAACTGTGGTTCTTGTTAGAGCAAAATTTGTGTACAAGAACTATGATGGACTTGGGAAACCCCCTAAGTTCTCTGTTTCTGTTGGGACAGCTATTGCTGCAACCATAAATCTTGCTGAATCTGATCCATGGAGTGAAGAGTTTCTATGGACTGTCAACAAGGATACACTGTCATTCTGCTTGATTGCAATTCCAAAAGGTGGCTCACCTGTAATTTCTTCCCTTGAAATCAGACCACTTCCTCAAGGAGCCTACACAAATGGCATGACAAATTTTCCTAATAAGTTGCTAAGGAAGAGTTATAGAATTGATTGTGGCCACTCCAATGAATCTTTAAGGTATCCCTTGGATCCATTTGATAGAATATGGGATGCTGATAGAAGTTTCACGCCCTTTCATGTTGCAACTGGGTTTAAGATTCAACTTAGCTTCAATAAGTCTAGTCTTGTGGAAGAACCACCAGCAGCTGTTCTTCAAACTGGGAGAGTTTTGGCTCGAAGAAATACGCTGACATACAACCTCCCTTTCGATACATTAGGAGACTACTACATCATCCTCTACTTTGCTGGAATTCTTCCTGTCTTCCCTTCATTTGATGTCTTTATAAATGGGGAACTGGTACAATCAAACTACACAATAAATAGCTCAGAAACCAGTGCTTTATACGTAACACAGAAGGGAATTGAGAGCTTGAATATAACATTAAAGAGTATCAGCTTTTACCCTCAGATCAATGCATTTGAGGTTTATAACATGGTTGATATTCCATCTGATGCCTCCTCAACCACAGTTTCAGCACTGCAGGTTATTCAGAAATCCACTGGTTTGGATCTTGGATGGCAGGATGATCCATGCCTTCCTTCCCCATGGGAGAAGATTGACTGTGAAGGAAGCCTAGTTACATCATTGGATCTTTCAGACATAAATTTGAGATCAATCAGTCCTACATTCGGTGACTTGTTAGACCTCAAAATATTGGATTTGCACAACACATCTCTTTCTGGTGAAATACAGAATTTGGATAGCTTGAACCATCTTGAGAAACTGAACCTGAGTTTCAATCAACTAACATCCATTGGTGCAGATCTGGAAAACTTGATGAACCTTCAAATATTGGACTTGCAGAACAATAGTCTAATGGGAGTAGTGCCTGATAGCTTGGGAGAGTTAGAGGACCTCCACTTACTAAATCTGGAAAACAACAAACTACAAGGCCCTCTACCACAGTCTTTGAACAAAGAAACATTAGAGATCAGGGCATCTGGTAATTTGTGTCTTACCTTTTCCACAACATCATGTGATGATGCATCATCCAGTCCTCCAATTGAGGCACCACAAGTGACTGTAGTTCCTCAGAAGAAGCACAATGTACATAACCATCTAGCAATCATATTAGGCACGGTTGCAGGAGCCACACTAGCCTTTCTCTTAATGTGTATTTCAGTATTGTTATACAAGACTAAACAGCAATATGAAGTATCCCACACATCAAGGGCAGAAATGGATATGAGGAACTGGGGTGCTGCAAAAGTCTTTTCCTACAAAGAAATCAAAGTAGCTACAAGAAACTTCAAAGAAGTTATAGGAAGGGGTAGTTTTGGATCTGTTTATCTTGGAAAACTTCCAGATGGAAAATCTGTTGCTGTCAAAGTTCGGTTTGACAAATCCCAACTGGGTGCTGATTCTTTCATCAATGAGGTTAATCTTTTGTCAAAAATCCGGCATCAAAATCTTGTGTCTTTGGAAGGATTTTGTCACGAAAGAAAGCATCAGATATTGGTTTATGAGTACTTACCTGGTGGATCCCTGGCTGATCACCTCTATGGTACAAACAGTCAAAAAACTTCCTTAAACTGGGTTCGAAGGTTGAAAATTGCTGTTGATGCAGCGAAAGGATTGGACTATTTGCATAATGGAAGTGAACCACGAATCATACACCGTGATATAAAGTGCAGCAACATCCTATTGGATATGGATATGAATGCCAAGGTCTGTGACTTAGGTCTCTCTAAGCAAGTAACTCAAGAAGATGCAACTCATGTCACCACTGTTGTCAAGGGTACTGCTGGTTATCTCGATCCAGAGTATTATTCCACTCAACAACTGACAGAGAAAAGTGATGTATATAGCTTTGGAGTTGTTCTTTTGGAACTCATTTGTGGGAGAGAGCCATTGACTCACTCTGGAACTCCTGACTCATTCAATTTGGTGTTATGGGCCAAGCCATACTTACAAGCTGGTGCATATGAGATTGTGGATGAAGACATAAGAGGAAGTTTTGATCCCTTGAGTATGAGGAAAGTAGCTTTGATTGCTATAAAGTCAGTGGAGAGAGATGCATCACAGAGGCCATCTATTGCAGAGGTATTAGCAGAGCTAAAGGAAGCCTACAATATTCAGCTCACACTCCTTGATTCTTCTCAAAATGATAACTGA	2715	0.4066	MDLRNAWVGFFLLCSFFLVTFCEQDGFLSLSCGGRTSLRDSSNISWVPDSTYITSGKTTTITYSDGSSSLNISARFFSNSRRRKCYRIPANNSTTVVLVRAKFVYKNYDGLGKPPKFSVSVGTAIAATINLAESDPWSEEFLWTVNKDTLSFCLIAIPKGGSPVISSLEIRPLPQGAYTNGMTNFPNKLLRKSYRIDCGHSNESLRYPLDPFDRIWDADRSFTPFHVATGFKIQLSFNKSSLVEEPPAAVLQTGRVLARRNTLTYNLPFDTLGDYYIILYFAGILPVFPSFDVFINGELVQSNYTINSSETSALYVTQKGIESLNITLKSISFYPQINAFEVYNMVDIPSDASSTTVSALQVIQKSTGLDLGWQDDPCLPSPWEKIDCEGSLVTSLDLSDINLRSISPTFGDLLDLKILDLHNTSLSGEIQNLDSLNHLEKLNLSFNQLTSIGADLENLMNLQILDLQNNSLMGVVPDSLGELEDLHLLNLENNKLQGPLPQSLNKETLEIRASGNLCLTFSTTSCDDASSSPPIEAPQVTVVPQKKHNVHNHLAIILGTVAGATLAFLLMCISVLLYKTKQQYEVSHTSRAEMDMRNWGAAKVFSYKEIKVATRNFKEVIGRGSFGSVYLGKLPDGKSVAVKVRFDKSQLGADSFINEVNLLSKIRHQNLVSLEGFCHERKHQILVYEYLPGGSLADHLYGTNSQKTSLNWVRRLKIAVDAAKGLDYLHNGSEPRIIHRDIKCSNILLDMDMNAKVCDLGLSKQVTQEDATHVTTVVKGTAGYLDPEYYSTQQLTEKSDVYSFGVVLLELICGREPLTHSGTPDSFNLVLWAKPYLQAGAYEIVDEDIRGSFDPLSMRKVALIAIKSVERDASQRPSIAEVLAELKEAYNIQLTLLDSSQNDN	904

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca01g01274	904	ProSitePatterns	Protein kinases ATP-binding region signature.	621	643	IPR017441	GO:0005524
	Cca01g01274	904	PANTHER	OS07G0107800 PROTEIN-RELATED	10	900	-	-
	Cca01g01274	904	Pfam	Leucine rich repeat	438	496	IPR001611	GO:0005515
	Cca01g01274	904	Pfam	Protein tyrosine and serine/threonine kinase	617	886	IPR001245	GO:0004672\|GO:0006468
	Cca01g01274	904	SUPERFAMILY	Protein kinase-like (PK-like)	595	886	IPR011009	-
	Cca01g01274	904	Gene3D	Ribonuclease Inhibitor	356	528	IPR032675	-
	Cca01g01274	904	ProSiteProfiles	Leucine-rich repeat profile.	438	460	IPR001611	GO:0005515
	Cca01g01274	904	ProSiteProfiles	Protein kinase domain profile.	615	891	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Cca01g01274	904	SMART	serkin_6	615	890	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Cca01g01274	904	Gene3D	Phosphorylase Kinase; domain 1	577	690	-	-
	Cca01g01274	904	Pfam	Malectin-like domain	30	344	IPR024788	-
	Cca01g01274	904	Gene3D	-	192	347	-	-
	Cca01g01274	904	PANTHER	LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED	10	900	-	-
	Cca01g01274	904	CDD	STKc_IRAK	621	888	-	-
	Cca01g01274	904	SMART	LRR_typ_2	436	458	IPR003591	-
	Cca01g01274	904	SMART	LRR_typ_2	459	482	IPR003591	-
	Cca01g01274	904	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	737	749	IPR008271	GO:0004672\|GO:0006468
	Cca01g01274	904	Gene3D	Transferase(Phosphotransferase) domain 1	691	902	-	-
	Cca01g01274	904	SUPERFAMILY	L domain-like	358	506	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca01g01274	Cca-Chr1	22742414	22751156	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca01g01274	7	900	Receptor kinase-like Gene Family	AT5G48740	63.087	0.0	1115

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-I-1	Cca01g01274		Malectin_like	1.9e-53	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca01g01274	-		-	gmx:100812804	1647.48