Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01272 ATGGCGACCCCAAACGACGCCGCATCGGCTTCGCCCCCGAAGAAGCCCCACCCCATCCCCTGGACCCACCAGGAAACCGTCCACCTCATCCGCGCCTACCAGGAGAAGTGGTACGCCCTGAAGCGCGGCCCCCTCCGCCACAACCAGTGGGAGGAGGTCGCCGTCGTGGTTGCCGCCCGCTGCGGCTACGACCTCGCCCACCCCGCCAAGTCCGCCCTCCAGTGCCGCCACAAGATGGAGAAGCTCCGCCAGCGCCACCGCGCCGAGAAGAAACACCCCGCCGCCGCCTGGCAGTACAACGCCCTCATGGACGACCTCGAACGCGGCCCTCTCCCCATCTCCGCCCTGGCCCCTTTCCAAAacgacgacgacgacgacgacgaacgcgacgacgacgacgacgCGTGTCGAAACGACACTCACTTCGACCACAGGGAGAGTTTTATAAAGTCCAAGAGTCTCAATTGCATTCTCGGCGAGAGGCCCGTCAGAGGGTTCGCGAGGGAGCGTGTTGACGAACCCGATGGAGACGACGACGACGTTTCGGGGCTCTCCGCGGAGATGAGGGCTTTCGCGGAGAGGTTCATtggaatggagaatttgaagatggagatggttaaggaaacccagaggtgtaggttggagatggagaAGAAGCGGATCCAGATGATACTCGAATCGCAGCGGAGAATTGTCGATTCCATTGCTAGAGCTTTTGCCTCTAACAAGAGGATCAAGATTACTCACCAAATCTCAAACTGA 762 0.5289 MATPNDAASASPPKKPHPIPWTHQETVHLIRAYQEKWYALKRGPLRHNQWEEVAVVVAARCGYDLAHPAKSALQCRHKMEKLRQRHRAEKKHPAAAWQYNALMDDLERGPLPISALAPFQNDDDDDDERDDDDDACRNDTHFDHRESFIKSKSLNCILGERPVRGFARERVDEPDGDDDDVSGLSAEMRAFAERFIGMENLKMEMVKETQRCRLEMEKKRIQMILESQRRIVDSIARAFASNKRIKITHQISN 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01272 253 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 176 248 IPR044823 -
Cca01g01272 253 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 12 163 IPR044823 -
Cca01g01272 253 Pfam Myb/SANT-like DNA-binding domain 20 105 IPR044822 -
Cca01g01272 253 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 176 248 - -
Cca01g01272 253 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 12 163 - -
Cca01g01272 253 MobiDBLite consensus disorder prediction 1 21 - -
Cca01g01272 253 MobiDBLite consensus disorder prediction 113 139 - -
Cca01g01272 253 Gene3D - 21 88 - -
Cca01g01272 253 ProSiteProfiles Myb-like domain profile. 20 83 IPR001005 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01272 21 90 Trihelix Transcription Factor Family AT3G14180 31.429 8.02e-08 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Cca01g01272 Myb_DNA-bind_4 8.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01272 - - var:108346948 363.614