Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01267 ATGGGTTTTCTATCTCACATTAATTACTTGCTGATTTTCTTTCTCAAATTCTCCACCTTCTATTTGGGTCTAAGTGCTGTGAATGATACTATCACATCAACTAGATTCATCAGAGACGCTGACACAATAAGCTCAAACAACGGTGACTTCAAGCTAGGCTTCTTCAGCCCTGAAAAATCCACACTTCGCTATGTAGCAATATGGTATCTCAATGAATCCTACACCATATGGGTAGCCAACAGAGACCAACCACTTAATGATTCATCTGGGGTGTTCAAAATTCACAAGGATGGGAATCTTGTGGTTGTGAATGGACAAAATAGTGTCATATGGTCAACAAATGTGTCAATTAGTGGGAACAATACTGCTGCTCAACTTGATGATTCAGGGAAGCTGACCCTGCTTGATGACAGAAGTGGAACACCAATATGGGATAGTTTCACACACCCTGCTGATGTTGCAGTGCCATCCATGAAGATTTCTGCCAACAGGGTCACAGGTAAGAAAATTGCGTATGTGTCATGGAAAAGCAGCTCTGATCCCTCGTCTGGGTACTTCACTGGGAGCCTTGAACGATTGGAAGCTCCAGAAGTGTTCTTTTGGTACAACAAAACGAAACCGTATTGGAGAACAGGTCCATGGAATGGAAGGGTCTTCCTTGGGTCACCAAGGATGTTAACTGAGTACTTATATGGGTGGCGTTTTGAGCCTAATGATAATGGAACTGCTTATCTAACCTACAATTTTGAAAACCCTTCTATGTTTGGAATCCTGACCATAACCCCACATGGCACACTTAAATTGGTCGAGTTTATGAACAAAAAGCATTTTCTGGAACTTGAGGTGGATCAAAATAGATGTGACTTTTATGGGACATGTGGGCCATTTGGAAGCTGTGATAACACAACAGTGTCAATTTGCAGCTGTTTAGAGGGGTTTGAGCCAAGGAATCAAGAGGAATGGAAGAGTAACAATTGGAGTAGTGGGTGTGTGAGGAATGTGCCATTGAATTGTGACAAGTTGAAGAATGGGAGTGATGTTGAACAAGATGGGTTTAGGGTGTACCATAATATGAAAGTGCCTGACTTTGCAGAGAGATCAAATGCTGGCCAAGACAAATGTGGAGCAGATTGCTTAGCCAATTGCTCTTGCTTGGCATATGCATATGATTCTTATATTGGTTGCATGTATTGGAGTAGGGACTTAATTGATTTGCAGAAATTTCCAAGTGGAGGGGTTGATCTCTTCATTCGTTTGCCATCACAACTTCTTGTTAGTGGTAAAAAGGGAAGAGATTCCAAGGGATTAATCATTGGCATTACCGGGGCAATTGGAGCATTGATAATTGCTGTTGGTGCTTATCTCTTGTGGCGGAAATGTACTCCTAAGCATAAAGGAAGTCAGCCTCAAAACTTGATTACCAAAGACCAAAAACAAATTAAATTGGAAGAGCTGCCACTTTTTGAATTTGAAAAGCTAGTAACCGCTACAAACAACTTCCACTTAGCTAATATGCTTGGCAAAGGAGGTTTTGGTCCCGTATACAAGGGACAACTAGAAAATGGACAAGAAATTGCTGTGAAAAGACTCTCAAAAGCATCTGGACAAGGATTAGAAGAATTCATGAATGAAGTAGTTGTGATTTCTAAACTTCAACATCGCAATCTAGTAAGACTTCTTGGTTGTTGCATTGAACGAGATGAACAGATGTTGGTCTATGAATTTATGCCAAATAAGAGTTTGGATTCGTTTCTATTTGATCCACTTCAACGGAAAGTTTTGGATTGGAAAAAACGCTTCAACATAATTGAAGGAATAGCTCGTGGAATACTTTATCTTCATAGAGATTCAAGACTAAGGATTATACATAGAGATCTTAAAGCAAGCAACATCTTACTAGATGATGAGATGAATCCAAAAATATCAGACTTTGGCTTAGCTAAAATTGTTAGAGGTGGTGATAATGATGAAGCTAACACAAGAAGGGTTGTTGGAACTTATGGTTATATGCCACCTGAATATGCAATGGAAGGAATTTTCTCAGAAAAATCAGATGTATATAGTTTTGGGGTGTTGTTGCTTGAGATCGTAAGTGGAAGAAGAAACACAAGTTTTTATAACAACGAGCAATCGCTTAGCCTAGTTGGATTTGCATGGAAACTATGGAATGAAGGCAATGTTATGTCTATAATAGATCCAGAGATACAAGATCCAATGTTTGAAAATAGTATGTTGAGGTGCATTCATATAGGACTTCTATGTGTGCAAGAACTTACAAAAGAAAGACCAACTATATCCACTGTGGTTTTGATGCTTATAAGTGAAATTACACATCTTCCTCCTCCAAAGCAAGTTGCATTTGTTCAGAAGCAAAATTGCCAAAGTTCAGAGTCTTCTCAAAAAAGTCATTTTAGCTCAAACAACAATGTAACTCTAAGTGAAATTCAAGGCAGATAA 2457 0.3907 MGFLSHINYLLIFFLKFSTFYLGLSAVNDTITSTRFIRDADTISSNNGDFKLGFFSPEKSTLRYVAIWYLNESYTIWVANRDQPLNDSSGVFKIHKDGNLVVVNGQNSVIWSTNVSISGNNTAAQLDDSGKLTLLDDRSGTPIWDSFTHPADVAVPSMKISANRVTGKKIAYVSWKSSSDPSSGYFTGSLERLEAPEVFFWYNKTKPYWRTGPWNGRVFLGSPRMLTEYLYGWRFEPNDNGTAYLTYNFENPSMFGILTITPHGTLKLVEFMNKKHFLELEVDQNRCDFYGTCGPFGSCDNTTVSICSCLEGFEPRNQEEWKSNNWSSGCVRNVPLNCDKLKNGSDVEQDGFRVYHNMKVPDFAERSNAGQDKCGADCLANCSCLAYAYDSYIGCMYWSRDLIDLQKFPSGGVDLFIRLPSQLLVSGKKGRDSKGLIIGITGAIGALIIAVGAYLLWRKCTPKHKGSQPQNLITKDQKQIKLEELPLFEFEKLVTATNNFHLANMLGKGGFGPVYKGQLENGQEIAVKRLSKASGQGLEEFMNEVVVISKLQHRNLVRLLGCCIERDEQMLVYEFMPNKSLDSFLFDPLQRKVLDWKKRFNIIEGIARGILYLHRDSRLRIIHRDLKASNILLDDEMNPKISDFGLAKIVRGGDNDEANTRRVVGTYGYMPPEYAMEGIFSEKSDVYSFGVLLLEIVSGRRNTSFYNNEQSLSLVGFAWKLWNEGNVMSIIDPEIQDPMFENSMLRCIHIGLLCVQELTKERPTISTVVLMLISEITHLPPPKQVAFVQKQNCQSSESSQKSHFSSNNNVTLSEIQGR 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01267 818 CDD PAN_AP_plant 334 420 - -
Cca01g01267 818 ProSiteProfiles Bulb-type lectin domain profile. 28 147 IPR001480 -
Cca01g01267 818 CDD STKc_IRAK 506 772 - -
Cca01g01267 818 Pfam S-locus glycoprotein domain 209 316 IPR000858 GO:0048544
Cca01g01267 818 CDD B_lectin 42 150 IPR001480 -
Cca01g01267 818 SUPERFAMILY alpha-D-mannose-specific plant lectins 67 181 IPR036426 -
Cca01g01267 818 Pfam D-mannose binding lectin 76 176 IPR001480 -
Cca01g01267 818 ProSitePatterns Serine/Threonine protein kinases active-site signature. 621 633 IPR008271 GO:0004672|GO:0006468
Cca01g01267 818 SMART blect_4 34 150 IPR001480 -
Cca01g01267 818 ProSiteProfiles Protein kinase domain profile. 500 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g01267 818 Pfam Protein tyrosine and serine/threonine kinase 501 770 IPR001245 GO:0004672|GO:0006468
Cca01g01267 818 Gene3D Phosphorylase Kinase; domain 1 473 575 - -
Cca01g01267 818 MobiDBLite consensus disorder prediction 796 818 - -
Cca01g01267 818 SMART serkin_6 500 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g01267 818 Gene3D - 24 149 IPR036426 -
Cca01g01267 818 Pfam PAN-like domain 348 405 IPR003609 -
Cca01g01267 818 SMART ntp_6 347 419 IPR003609 -
Cca01g01267 818 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 18 817 - -
Cca01g01267 818 PIRSF SRK 2 818 IPR024171 GO:0004674
Cca01g01267 818 ProSiteProfiles EGF-like domain profile. 283 319 IPR000742 -
Cca01g01267 818 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 18 817 - -
Cca01g01267 818 SUPERFAMILY Protein kinase-like (PK-like) 485 795 IPR011009 -
Cca01g01267 818 Gene3D Transferase(Phosphotransferase) domain 1 576 782 - -
Cca01g01267 818 ProSiteProfiles PAN/Apple domain profile. 338 420 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01267 Cca-Chr1 22387934 22398947 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01267 488 818 Receptor kinase-like Gene Family AT4G11530 56.213 1.96e-125 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca01g01267 PK_Tyr_Ser-Thr 4.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01267 - - gmx:100786846 1417.14