Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01264 ATGGAGGCTCGCCGGAGGATAACGCTTTACGACCAAATGACAGCTaccaacaccaccaccaccaccaccacctccaGAGACTCGCTAGCCAGCCTCATGCTGGACGACGTCGTTTTCAAGAAGAcccaagcccaagcccaagcccaagccgaagcGAGCCGAAGCCGGACTCTCCAAGACATAATTCGCGAAGAAGAGACTAACCACGGCGCCAAGGATCGGAACTCATGGAAAGCCTTCAAGGATAAGCTTCGGCTCAAGCGCGCTCTCGGCTCGGCTTGGTCCTCCTCCGCCGCTAATACTAATAacgacgacgacgacgacgatgaagacgaTAGTAACAACATTaacggcaacggaaacggaaacggagacggagacggagacggaaacTTACCTGCTCAGTCGGAGGCGCAGAACGACGTCGTTGTGGGCGTGTCGTTGATGGATTTGTTGGAGGAGACGACGGAGCAGGAAATGGAGTTGTGCAGAGCCAGCGATGAGGACGAGGGTTATGTtgatgatgatgatgatgatgatgatgatgaCGTGGAGGAGTGTAAATACAAGAAGGGAGAAGCGGAAGAAGAGGGGAAAGAGGGTTTGGTGGAGTACAAGTGCTGCGTCTGCATGGTGCGGCATAAGGGCGCGGCTTTTATCCCCTGCGGACACACCTTCTGCAGAACGTGTTCCCGCGAGGTTTGGGTCACCAGAGGGAATTGCCCTCTTTGCAATAATTTGATTTTGGAAATTCTTGATATCTTCTGA 768 0.4141 MEARRRITLYDQMTATNTTTTTTTSRDSLASLMLDDVVFKKTQAQAQAQAEASRSRTLQDIIREEETNHGAKDRNSWKAFKDKLRLKRALGSAWSSSAANTNNDDDDDDEDDSNNINGNGNGNGDGDGDGNLPAQSEAQNDVVVGVSLMDLLEETTEQEMELCRASDEDEGYVDDDDDDDDDDVEECKYKKGEAEEEGKEGLVEYKCCVCMVRHKGAAFIPCGHTFCRTCSREVWVTRGNCPLCNNLILEILDIF 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01264 255 Pfam Zinc finger, C3HC4 type (RING finger) 204 248 - -
Cca01g01264 255 PANTHER OS01G0917900 PROTEIN 117 255 - -
Cca01g01264 255 PANTHER OS01G0917900 PROTEIN 19 105 - -
Cca01g01264 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 179 255 IPR013083 -
Cca01g01264 255 SUPERFAMILY RING/U-box 206 251 - -
Cca01g01264 255 SMART ring_2 207 244 IPR001841 -
Cca01g01264 255 MobiDBLite consensus disorder prediction 168 184 - -
Cca01g01264 255 PANTHER OS01G0917900 PROTEIN 117 255 - -
Cca01g01264 255 PANTHER OS01G0917900 PROTEIN 19 105 - -
Cca01g01264 255 MobiDBLite consensus disorder prediction 157 184 - -
Cca01g01264 255 MobiDBLite consensus disorder prediction 93 135 - -
Cca01g01264 255 CDD RING-HC 207 244 - -
Cca01g01264 255 ProSiteProfiles Zinc finger RING-type profile. 207 245 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01264 Cca-Chr1 22276742 22277771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01264 4 255 C3H Transcription Factor Family AT3G25030 36.090 7.62e-44 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01264 - - gmx:100819018 227.254