Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01260 ATGGCTGTTCCAAAAGTGAACGAAAAATTGCTTGAAGACCTTGAAGTAATGGGATTTCCAAAGGCACGAGCAACCAGAGCACTTCATTATTCTGGAAATACGAGCTTAGAGGATGCCATAAattggataattgatcatgagaatgacattgatattgatGAGATGCCATTGGTAGATGTAGACATTGATATAGATTCTTCCGAATCATTCCCTATCACAGAAGAAATGAGAATCAAAGCTCAGAATTTAAGGGTACAAGAGGGTAACAGGAAACAGGAGGAAGAAAAAAGATTGGAGAGAGAAAGGGAGAAGGAGAGGATTCAAGCTGGTAAGAGACTCCTTGAGGCAAAGCGAATTGCTGATGAAAATGAAAGAAAACGGACTTTGTCCTTGAGAAAAGCAGAAAAAGAAGAAGAGAAAAGAGCCAGAGAAAAAGTTCTCCAGAAACTGGAGCAGGATAAGTTAAATAGAAGGTCTAAACATGGATTACATTTAGAGGGCCAAGCAACTGTGAGATCATCAGCTATTGAAATACAACAAGAAAAGAAGCCAGAGCCTGTTTATACAACTGCAAAAGTTGAGCAGCTGAGAGAATGTCTGAGGAATCTTAAGCGTAACCATCAGGGTGAGGATGCAAGAGTCAGAAGGGCCTTTCAAACACTTATAGTCTATGTTGGAAATGTTGCCAAGAATCCCAAGGAGGAAAAGTACAGGAAAATTCGATTGAGTAATCCACTATTCAAGGATAGAATTGGAAGTTTAAATGGAGGTGTAGAGTTTCTTGAACTATGTGGTTTTGAGAGAACGGGCGACTTCTTGTATCTTTCTCATGAGAAGGTTGACATGAGGCTGCTAAATTCAGCTGGTTTTGCCTTGAATTCTGCAATCACAAATCCTTTCTTTGGTGTTTTAAGTACTCCTTCCAATTAA 930 0.3817 MAVPKVNEKLLEDLEVMGFPKARATRALHYSGNTSLEDAINWIIDHENDIDIDEMPLVDVDIDIDSSESFPITEEMRIKAQNLRVQEGNRKQEEEKRLEREREKERIQAGKRLLEAKRIADENERKRTLSLRKAEKEEEKRAREKVLQKLEQDKLNRRSKHGLHLEGQATVRSSAIEIQQEKKPEPVYTTAKVEQLRECLRNLKRNHQGEDARVRRAFQTLIVYVGNVAKNPKEEKYRKIRLSNPLFKDRIGSLNGGVEFLELCGFERTGDFLYLSHEKVDMRLLNSAGFALNSAITNPFFGVLSTPSN 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01260 309 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 5 46 IPR015940 -
Cca01g01260 309 MobiDBLite consensus disorder prediction 84 105 - -
Cca01g01260 309 CDD PUB_UBA_plant 200 304 - -
Cca01g01260 309 CDD UBA_PUB_plant 6 53 - -
Cca01g01260 309 Gene3D - 197 294 - -
Cca01g01260 309 SUPERFAMILY UBA-like 5 57 IPR009060 GO:0005515
Cca01g01260 309 SUPERFAMILY PUG domain-like 191 300 IPR036339 -
Cca01g01260 309 Pfam UBA/TS-N domain 7 43 IPR015940 -
Cca01g01260 309 SMART PGNneu 216 276 - -
Cca01g01260 309 Coils Coil 119 156 - -
Cca01g01260 309 Pfam PUB domain 213 281 IPR018997 -
Cca01g01260 309 PANTHER PUB DOMAIN-CONTAINING PROTEIN-RELATED 1 306 - -
Cca01g01260 309 PANTHER F13M7.16 PROTEIN 1 306 - -
Cca01g01260 309 Coils Coil 193 213 - -
Cca01g01260 309 Coils Coil 84 108 - -
Cca01g01260 309 Gene3D - 8 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01260 Cca-Chr1 22167004 22181649 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01260 1 304 C2H2 Transcription Factor Family AT1G04850 59.091 2.25e-102 301