Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01256 ATGGGTTCAGTCTTAGAGGTTGTTCTAGTAACTGGGTTGGATTTTCAATTCATGTTCAATGAGACCATTCGTGTTCTTCAAGAAGAAGGATCAGATGTTGCTAATGCCAGTTATACAGTTATTGAAAATGAAGTTTTTCATACAATACACTGTCGGGTTGGGGAATCTGCAAATGCAACTTTGAGGATATCTGAGAAACTAAAGAAGTTTCTGTATCATTAA 222 0.3604 MGSVLEVVLVTGLDFQFMFNETIRVLQEEGSDVANASYTVIENEVFHTIHCRVGESANATLRISEKLKKFLYH 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01256 73 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 72 IPR015660 GO:0003700|GO:0006357
Cca01g01256 73 PANTHER TRANSCRIPTION FACTOR BHLH162 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01256 Cca-Chr1 21855871 21856168 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01256 2 71 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 44.444 1.07e-15 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01256 - - gmx:100810793 120.553