Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01255 ATGGAGAACAACCCTAGTTCATCAAAAAGTGATAGAAAAATGATTGAGAGGAACAGAAGAAATCAAATGAAGGCTCTTTTCTCCAAGCTCAACTCAGTTGTGCCTCATCAAAGCTCAAGGGAGGCAATTTCACGACCGGATCTGATAGATGAAGGCACAAACTACATCAAGAGCTTACAGATTAAGTTGGAGAAAATGAAGGAGAAAAGGAGCAACCTATTGGAAAGTAAGATGTCAGAAAATGCTAGCATGAGTATGGGGTTGAAGTCTCCACAATTTAAGATCCAACAAATGGGTTCAGTCTTAGAGGTTGTTCTAGTAACTGGGTTGGATTTTCAATTCATGTTCAATGAGACCATTCGTGTTCTTCAAGAAGAAGGATCAGATGTTGCTAATGCCAGTTATACAGTTATTGAAAATGAAGTTTTTCATACAATACACTGTCAGGTTGAACTATTGCATCCTTTAGGGATATCAATGGAGAACAACCCTAGTTCATCAAAAAGTGATAGAAAAATGATTAAGAAGAACAGAAGAAATCAAATGAGGGCTCTTTTCTCCGAGCTCAACTCAGTTGTGTCTCATCAAAGCTCAAGGGTATTACTCTACTCTTAA 615 0.3789 MENNPSSSKSDRKMIERNRRNQMKALFSKLNSVVPHQSSREAISRPDLIDEGTNYIKSLQIKLEKMKEKRSNLLESKMSENASMSMGLKSPQFKIQQMGSVLEVVLVTGLDFQFMFNETIRVLQEEGSDVANASYTVIENEVFHTIHCQVELLHPLGISMENNPSSSKSDRKMIKKNRRNQMRALFSELNSVVSHQSSRVLLYS 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01255 204 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 152 IPR015660 GO:0003700|GO:0006357
Cca01g01255 204 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 160 200 IPR015660 GO:0003700|GO:0006357
Cca01g01255 204 PANTHER TRANSCRIPTION FACTOR BHLH162 160 200 - -
Cca01g01255 204 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 5 76 IPR036638 GO:0046983
Cca01g01255 204 Gene3D - 1 87 IPR036638 GO:0046983
Cca01g01255 204 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 7 59 IPR011598 GO:0046983
Cca01g01255 204 Pfam Helix-loop-helix DNA-binding domain 10 60 IPR011598 GO:0046983
Cca01g01255 204 Coils Coil 49 76 - -
Cca01g01255 204 PANTHER TRANSCRIPTION FACTOR BHLH162 1 152 - -
Cca01g01255 204 SMART finulus 13 65 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01255 Cca-Chr1 21850263 21853107 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01255 3 151 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 41.975 9.93e-43 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca01g01255 HLH 1.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01255 - - gmx:100810793 247.284